Panicum virgatum (switchgrass): 120641953
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Entry
120641953 CDS
T07260
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 5
KO
K05391
cyclic nucleotide gated channel, plant
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
120641953
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pvir04040
]
120641953
Ion channels [BR:
pvir04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
120641953
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GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Ion_trans_2
Tet_res_leader
IQCJ-SCHIP1
Motif
Other DBs
NCBI-GeneID:
120641953
NCBI-ProteinID:
XP_039774236
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All DBs
Position
7K:49297845..49304197
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AA seq
721 aa
AA seq
DB search
MFDSAQKAQYMDGHRERFIRLEESSPRSSVPSEMGGRSTLRFSMPGFGYGSFNALRSFLS
GVRKGSGRLKSLRQSLTSGAPKTAFAEDLKSYKINIFDPQDKLLFQMNWVFFVSCLFAVA
VDPLFFFLPIINNSNCIGIDKKLAVTSTIIRTIIDCVYLIRVCLQFRTAYVAPSSRVFAT
GELVIDPMLIAKRYFKSYFAMDFVALLPLPQIVVWRYLHIPDGPDVRTTKTALVWVVLVQ
YIPRLLRIFPVIKDLKRTAGVFIETAWAGAAYYLLWFMLAGHNVGTLWYFLTIQREDSCW
HKNCDPNGGCNSSYLYCNNTRDDNYDKWLNSTQVFDLCNGNQPDPFNFGIYQQALVSGIL
GPGNFVKKLCYCFWWGLQNLSTLGQGLSTSIYPGEVLFSIFICVLGLILFALLIGNMQSY
LQSVAIRLEEMRVKKRDAEQWMHHRSLPPEIRQRVRRYERYRWLETRGVDEESLVQTLPK
DLRRDIKRHLCLGLVKRVPLFENMDERLLDAICERLRPALYTENEFILREGDPVDEMHFI
LHGCLESVTTDGGRSGFFNKVQLKEGSFCGDELLTWALDPKSGANFPASSRTVKALTEVE
AFALCAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYYKRKMAEQRR
KEEEAASRPSSSHPSLGATIYASRFAANAMRGVHRLRSKAVPAIVRLPKPPEPDFGVDDA
D
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacagtgctcaaaaagctcaatacatggatgggcacagagagaggtttattagg
ctggaggagtcaagtcctaggtcatctgtaccttctgaaatgggaggcaggagtaccttg
aggttcagcatgcctgggtttggttatggttcatttaatgcactgagatctttcttgtca
ggggttcgaaagggttctggacgactgaagtcacttagacagtcacttacgtctggagct
cctaaaacagctttcgcggaagatcttaaatcatataagataaatatatttgatccccag
gacaaacttcttttccaaatgaactgggttttcttcgtgtcttgcttatttgctgttgca
gtggatccactgttcttctttctacccatcatcaacaattcaaactgcattggcatagat
aaaaaattggcagtgacatcaacaataatacggacgattattgattgtgtctaccttata
cgtgtgtgtcttcaattccgcactgcttatgttgccccatcttctcgtgtgtttgcaact
ggtgagcttgtgattgatccaatgctaattgcaaagcggtactttaaaagttactttgca
atggactttgttgcattgctaccacttccacagattgttgtttggaggtatctccacatt
ccagatggcccagatgtacggacaacaaaaactgcactggtctgggttgtcctggtgcag
tacattccaaggttgcttcgaatattccctgtgatcaaagatttgaaaagaacagctggt
gtttttattgaaactgcttgggctggtgctgcttattatcttctatggtttatgctggct
ggtcataatgtaggtactttgtggtactttttaaccatacaacgtgaagatagctgctgg
cataagaattgtgatcccaatggtggatgcaatagcagctacttgtattgcaataatact
cgggatgataactacgataaatggcttaatagtacccaagtattcgacctgtgcaatggt
aaccaacctgatcctttcaactttggcatttaccagcaagcactggtctctggaatactt
ggtccaggaaattttgtcaaaaaattgtgttattgcttctggtggggattgcaaaatcta
agcacccttggtcaagggctttcaacaagcatataccctggagaagtgctattctcaatt
tttatatgtgtgctcggactaatcctcttcgctcttctcattggtaacatgcagtcttat
ctccaatcagttgctatacgtctcgaagaaatgagagttaagaaacgtgatgctgagcag
tggatgcaccaccgttcactgccaccggaaatcagacaaagagtgaggcgttatgaacga
tataggtggttggagacgagaggagtagatgaagaaagtttggttcaaacacttccgaaa
gatcttaggagggatatcaaacgacatctctgtttgggtctcgttaaaagggtacctttg
tttgagaacatggatgaacgattgttggatgcaatatgcgagcgactaagacctgcactc
tacactgaaaatgaattcatcctgagagaaggtgatccggtggatgagatgcattttatt
ctgcatggttgtttggagagcgtaaccactgatggtggacgaagtggattctttaacaaa
gtccagctaaaggaaggttctttctgtggtgatgagttactcacctgggcattggacccc
aagtcgggtgctaatttcccagcttctagtagaactgtcaaggcactcaccgaggttgag
gcatttgccttgtgcgctgaggagctgaaattcgtggccagtcagttcaggaggctgcac
agcaggcaggttcagcacacattcagattctattcccagcaatggaggacttgggccgcc
tgcttcattcaagcggcatggcgccgctactacaagaggaagatggcggagcagcgtcgc
aaggaagaagaggcagcaagcaggccaagtagtagccaccctagccttggggcgaccatc
tacgcatctcgttttgcggccaacgccatgagaggggttcacagactaagaagcaaggct
gtccccgcaatcgtcaggctgccaaagcccccagaaccagattttggtgtcgatgacgct
gactaa
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