Panicum virgatum (switchgrass): 120641995
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Entry
120641995 CDS
T07260
Name
(RefSeq) small RNA degrading nuclease 3-like
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120641995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120641995
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
RNases
120641995
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GFIT
Motif
Pfam:
RNase_T
DUF1722
Motif
Other DBs
NCBI-GeneID:
120641995
NCBI-ProteinID:
XP_039774298
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All DBs
Position
7K:complement(49801954..49818824)
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AA seq
454 aa
AA seq
DB search
MAKRLAAAEKEVLVEVVRFTQKNGLKGSDGGWKEFLSRNDKKFGDSVSDPRKRSRDVLLA
FLQTFSKDFQKYFGKLVKRQKERSAVQQYMNYFPDKVSPEQKLVQLTAEHPEYRKNYCFP
SYREGWKVLRIGEVSSLVSSSAMLAIDCEMVLCDDGTEAVVRVCVVDNNLEVKLDILVNP
SKAITDYRTHITGVSKKDLGVTSSLVDVQKSLKRILAKGKILIGQSLYRDLCALKIDYSQ
VIDTAYIFKYANLPTTASASLNSLCKSVLGYSVREDGEPHNCLKDAEAAMNLVLAKLKHG
FHDPIKVAASCVSESDALKLLAHRIPVHLPCQELCKVFSGNPSIDDKIDSRIRGEFYSTC
ISFNEIDEVEKAFEELDGQMTKDSGGRLQKYVLMKRDSGDVVSFYVRKMVYASQPNQFEF
PKKRPQPTEEAEPKKEQADGDQQKKKRKSKKHVN
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcggctcgccgccgccgagaaagaggtgctggttgaggtcgtgaggttcacc
cagaagaacgggttgaaaggctctgatggggggtggaaggagtttctttctcggaatgac
aagaagtttggtgattcagtaagcgaccctagaaagcgctcaagggatgtgctgctcgcc
ttcctgcaaaccttctccaaggatttccaaaagtacttcggcaaattggtgaagcgtcaa
aaggaaagaagtgctgttcagcagtatatgaactattttcctgacaaggtttctcccgag
cagaaacttgttcaactgacagcagagcacccagagtacaggaaaaattattgcttccca
tcataccgggagggatggaaagtgctgcggataggagaagtctctagtttggtgagctcg
agtgctatgttggcaattgactgcgagatggtcctttgtgatgatggcacggaggctgtg
gtccgagtatgtgttgtagacaacaatcttgaggtgaagctggacatacttgtaaatcct
tctaaagctattactgactatagaacacacatcactggtgtatctaagaaggatttagga
gtcacatcatcgctagttgatgttcagaaatcgctcaagaggatcttggccaaaggaaag
attttgatcggccagagcttatatagagatttatgtgccttaaagattgattactctcaa
gttattgatacagcatacatctttaagtatgcaaatttacctactacggcatcagcttcc
ttaaatagtttgtgcaagtctgttttagggtattctgttcgagaagacggagaaccacat
aattgcttaaaggatgcagaagctgcaatgaatctagttcttgcaaagcttaagcatgga
tttcatgatcccattaaagttgctgcaagctgtgtatctgaatctgatgcattgaagtta
cttgctcatagaataccagtgcacctgccttgccaagagctgtgcaaagttttctctggg
aaccccagtattgatgacaagattgattcaaggattcgaggtgaattttattcaacatgt
atttcgttcaatgagatagatgaagtagagaaggcttttgaagaactggatggacaaatg
actaaggactctggtgggcggcttcagaaatatgtgctgatgaagcgcgacagtggagat
gtggtgagtttctacgtccggaagatggtatatgcttctcagccaaaccagttcgagttt
ccaaagaagagaccacagcctactgaggaagcagaaccaaagaaagaacaagctgatggg
gatcagcaaaagaagaaacggaagagtaagaagcacgtgaactag
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