Panicum virgatum (switchgrass): 120642088
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Entry
120642088 CDS
T07260
Name
(RefSeq) uracil-DNA glycosylase, mitochondrial-like isoform X1
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120642088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120642088
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
120642088
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
120642088
Prokaryotic type
120642088
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
PTHB1_CtH
Motif
Other DBs
NCBI-GeneID:
120642088
NCBI-ProteinID:
XP_039774422
LinkDB
All DBs
Position
7K:complement(51429586..51434247)
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AA seq
304 aa
AA seq
DB search
MAPSPPTPTAPKTIADFFARPAKRLRAGAPAPASASLSSSSSFSPEQRRRADTNLALARA
RHNLRLAESRAKASGGAAKLEELLVEETWVEALDGELRKPYALELCRFVTHERLHGPLPV
YPPQHLVFHALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGIKKPSSLGNIFKELE
KDLGCTVPSHGNLERWAVQGVLMLNTVLTVREHQANSHAKKGWEEFTDAVIKTISQKKSG
LVFLLWGNSAQSKTRLIDGTKHHILKSAHPSGLSANRGFFGCRHFSKTNQILEKLGLSAI
DWQL
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgtcccctcccaccccgaccgcgccaaaaaccatcgccgacttcttcgcgcgc
cccgccaagcgcctccgcgccggcgctcccgccccggcgagcgcgtccctctcctcgtcc
tcctcgttctcgccggagcagcgccgccgcgccgacaccaacctcgcgctcgcccgcgcg
cgacacaacctccgcctcgccgagtccagagccaaagcctcggggggcgccgcgaagctg
gaggagctcctcgtggaggagacgtgggtggaggcgctggacggggagctgcgcaagccc
tacgcgctcgagctctgccgcttcgtgacacacgagcggctgcacggcccgctgcccgtc
tatccgccgcagcacctcgtcttccacgcgctcaacaccaccccgttcgaccgcgtcaag
gctgtcatcatcggccaggatccatatcatggccctggtcaggccatgggattatctttc
tcagtgccggaggggataaaaaaaccttccagcttaggtaacatatttaaagagctggaa
aaagacctaggttgcactgtgccatcgcatggaaatttggaaagatgggctgtgcagggt
gttcttatgctcaatactgtactaactgtgagggagcatcaagcaaactcacatgccaag
aaaggatgggaggagtttactgatgctgttattaagaccatatcacagaagaaatcagga
ctagtctttcttctttggggaaattctgctcaatcaaagacaaggttgattgatggaacg
aaacaccacattttgaaatcagctcacccctcaggcttgtctgcaaaccgaggtttcttt
ggatgcaggcacttttccaaaacaaatcagatcctagagaagctgggactatctgcaatc
gattggcagctgtag
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