Panicum virgatum (switchgrass): 120642224
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Entry
120642224 CDS
T07260
Name
(RefSeq) protein CHROMATIN REMODELING 24-like isoform X1
KO
K20093
DNA excision repair protein ERCC-6-like [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120642224
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Others
120642224
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_34
HDA2-3
GCOM2
Med21
Motif
Other DBs
NCBI-GeneID:
120642224
NCBI-ProteinID:
XP_039774619
LinkDB
All DBs
Position
7K:complement(52687952..52694997)
Genome browser
AA seq
1069 aa
AA seq
DB search
MASPPPFDICGDLDDEPATAIPAGRHHPAAAPTPNGLNDRLLRLARSRQDPNPNPNPPPE
APAEEARKVKLAGRRRLCKLATHQPEEDHQQQQQQDGGESIRDILDDLTTRLNSLSVHKQ
PNPTASSREEQLAPLPCDITSDPDDQSTEDGDTHAGASSPLQISSSDEAATTITRRAQVK
PETTSVASASTDYACGEAPLGTGKSKGTKDVGRIDRVPKVSPFIDSDSDYDDGDEEEGTS
TAYAAKHVRRKAFTRRQTKASTFMNNDYSSDDVLGQEKENHGAVENDAEDVGWEKMEDFK
MEPTGTAATSKPYKLPGRIFKMLYPHQREGLRWLWVLHCRGTGGILGDDMGLGKTMQVSA
FLAGLFHSRLIKRALIVAPKTLLAHWTKELSVVGLKHKIRDYSGPSTNIRNYELQYAFKE
GGVLLTTYDIVRNNYKLIRGNSYNNDDDDEEGTVWNYVILDEGHLIKNNKTQRAQSLFEI
PCAHRIVISGTPIQNNLKEMWALFNFCCPDVLGDKQQFKTRYEMAILRGNDKNATTREKH
IGSNVAKELRERIKPYFLRRMKGEVFLDSGASEEKTLAKKNELIVWLKLTACQRKLYEAF
LKSELVHLAVQPKGSPLAAITILKKICDHPLLLTKKAAEGVLEGMDEMTDDQDIGMVEKM
AMNLADMDPDDDALEVGQDVSCKLSFIMSLLRNLVKEGHHVLIFSQTRKMLNLIQEAILL
EGYKFLRIDGTTKVSDRERIVKDFQEGPGAPIFLLTTQVGGLGLTLTKAARVIVVDPAWN
PSTDNQSVDRAYRIGQTKDVIVYRLMTSATIEEKIYKLQVFKGALFRSATEQKEQTRYFS
KSVPVLLLFLVIVCSISYWIFMAILYPQEIQELFSLPQQGFDVSLTQKQLQEEHGQQVVM
DESLRQHIQFLEQQGIAGVSHHSLLFSKTATLPTLSESDALDSKSRGMSMMPRHYYKGSS
SDYVAGGAAFALKPKDEKFTAPRYSPSNRSAEIPEKIKTRIDRLSQTLSNEALLSKLPDG
GEKIRRQISELDEKLTSAEKEKREREREKGGVICVDDLSADMESIVLSV
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atggcatctcccccgcctttcgacatttgcggcgatctcgacgacgagccggccaccgcc
atccctgccggtcgccatcaccctgccgcagcccccacgcccaacggcctcaacgaccgc
ctcctccgcctcgcccgcagccgccaagaccctaaccctaaccccaatccgcctccagaa
gcccccgctgaagaagccaggaaggtcaagctcgccggccgacgccgcctatgcaagctc
gccacccaccaaccggaggaggaccaccagcagcagcagcagcaggacggcggcgaaagc
attcgcgacatcctggacgatctcaccacccgcctcaactcgctgtccgtccacaagcag
cccaaccctaccgcgagttcaagagaagagcagctcgcccccctgccgtgcgacatcacc
tcggacccagatgaccagagcaccgaggacggagatacccatgccggcgcctcctcgccc
cttcagatttctagctctgatgaagcagctacaaccatcaccaggcgggctcaagtcaag
ccagaaactacttcagtcgcctcagcctctactgattatgcctgtggtgaggcccccctt
ggcacggggaagagcaaaggtaccaaagatgtggggaggatagatagggtaccaaaggtt
tcacccttcattgattctgattctgattatgacgacggtgatgaggaggaaggaacatca
acagcttatgctgctaagcatgtcagaaggaaggcattcacaaggagacaaaccaaggct
tcaacattcatgaacaatgactacagcagcgatgacgtcctgggtcaggagaaggaaaac
catggagctgtggagaatgacgccgaggacgttggatgggagaagatggaggacttcaag
atggagccaaccggaactgctgcaacatccaaaccatacaagctcccaggaaggatattc
aagatgctttaccctcatcagcgggagggcctccgatggctctgggttctgcattgcagg
ggaactggagggatcctaggggatgacatgggccttggcaagaccatgcaggtttctgca
tttctggctggattgtttcattctcgcctaatcaagagggcgctcattgtcgctccaaag
acacttctggctcattggaccaaggagctctcagttgttggccttaaacataagatcaga
gactactctggccccagcacaaatattcgcaattatgagcttcagtatgccttcaaggag
ggtggtgtcctcctaacaacctatgacattgtccggaacaattacaagctgataagaggc
aattcctacaacaatgatgacgacgacgaggaaggaacagtgtggaattacgtcattctt
gatgaggggcatctaataaaaaacaataagacgcaaagggcccagagcttgttcgaaata
ccttgtgcccatcgcattgtgatcagtgggacgcctatccaaaataacttgaaggaaatg
tgggctctgttcaatttctgctgcccggatgtcttgggtgataaacaacagttcaaaaca
aggtatgagatggctatccttcgaggaaatgacaagaatgctaccactcgagagaagcac
ataggctcaaatgtagctaaggaactaagagagcggatcaagccatactttttgcgacgc
atgaaaggtgaagtattccttgatagtggtgcatcagaagaaaaaacattagcaaagaag
aatgagctaattgtctggctgaagttaacggcttgccagaggaagttatatgaagctttt
ctcaaaagtgagttggttcatttagctgtacaacctaagggatcaccactggctgcaatc
acaatattgaagaaaatatgcgatcacccactgctattgactaagaaagctgctgaaggt
gtcttggaagggatggatgaaatgacggatgatcaagacataggaatggtagaaaaaatg
gccatgaaccttgcagatatggatcctgatgatgatgcactggaagttggtcaggatgtc
tcatgcaaactgtcattcatcatgtccttgttgcggaaccttgttaaagaggggcatcat
gttttaatcttttcgcagacccgtaaaatgctgaaccttattcaggaagccatattatta
gagggctacaagttcttgcgcattgatggcacaacaaaggtttctgatcgggaaaggatt
gtgaaggatttccaagagggtcctggagctccaatatttttactaaccacacaagttggt
ggacttggacttacacttaccaaggcagcacgcgtcatagtagttgatcctgcttggaac
ccaagtacagacaatcaaagtgtagatcgtgcttaccgaattggccagaccaaagatgtg
attgtataccgcttgatgacatctgcaaccattgaagaaaagatatacaaattacaggtt
ttcaagggggctctattcagatcagctacagaacaaaaagagcaaacacgttacttcagc
aagagtgtacctgtcctgcttctatttcttgtcattgtttgctcaatctcctactggata
tttatggctatattgtaccctcaggagattcaagagctttttagtttgccacaacaaggt
tttgatgtttccctcacgcaaaagcagttgcaagaagagcatggtcaacaagttgttatg
gatgagtccttgaggcagcatatacagtttctggagcaacaaggtatagctggcgtgagc
catcacagcctcctgttctctaaaacagcaaccctgcccacattgagtgagagtgatgca
ctggacagcaaatctcgtggaatgtccatgatgccccgtcactattacaagggatcctca
tctgactatgttgctggcggggcggcttttgcattgaagccaaaagatgaaaaattcact
gctccaaggtactccccaagcaacagaagtgcagagattcctgaaaagatcaagacaaga
atcgaccgactttcacagactctgtccaatgaggcactgctgtcgaagctaccagatggt
ggggagaagataaggaggcagataagtgagctggatgagaagctgacttctgcggagaag
gagaagagagagagggagagggagaaggggggagtgatctgcgtggatgatctgagcgca
gatatggagagcatagtgttgtcggtttag
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