KEGG   Panicum virgatum (switchgrass): 120642362
Entry
120642362         CDS       T07260                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1-like isoform X1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120642362
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvir03021]
    120642362
Enzymes [BR:pvir01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     120642362
Transcription machinery [BR:pvir03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     120642362
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 120642362
NCBI-ProteinID: XP_039774773
LinkDB
Position
7K:complement(39833659..39841583)
AA seq 1545 aa
MADDDPSAAAAAAGVHIPQGSIRRVKLSVASNEEILKAQPVDALGKPFPITHGSQLQDNP
SLGLPLQVGSCESCGATQIDKCEGHFGFIELPAPIYHPSHVTELGKILNIFCLCCLRLKK
PNKGTGKERKFTSCSYCPDIPPLCVTQVKKSNGARSLELKAPLKEVVGDGFWSFLDQFGF
HTKRACHRRPLHPKEVQNIMQKISEEKRMRLASRGYNLQNGFIMSYICVPPNCLHVSNLL
DNNTAMCPFDTSKDLLRKVLRIIEQIKSSSISHPNFEASEVGEDDLQVAVANYINMGGTA
KGTQSVTFTKPEPKQWQQRMKALFISKSSSFTCRAVITGDPYIGLDVVGVPDEVAGRMSV
EEHVTDYNIARLQVMTDKGLCLTYTDVNSNTYDLSGEKGSKKRTTLRVGETVDRRVLDGD
LVYLNRSPSIDKHSIQALYVHVHDDHTIKINPLICGPLGADFDGDCVHIFFPRSVSARVE
ATELFTVENQLVNSHNAKLNFQIKNDCLLALKLMCDRRYSRQEANQIAMFLPGIIPHGDH
YWTIPQILQTTGALTTLLASQTNKESVGSLVTAIISSTHSDKGPREAMKLLNLLQPLLME
SLLMDGFSISLRDFDVPSAMQKVIESTSLELDEYRESIVDFIAHASALGLLVDPKSDSAL
RKLVEQLGFLGRQLQNNGTLYSGNLVEVCYKFLNKSSGSTKCYDPLKAHDVVRSSFYNGL
NPHEELLHSISVREKIERSSSKGLAEPGNLFKNMMAILRDVIVCYDGTIRTSCSKLIVQF
CSTNASRPVTPGDPVGILAATAVANAAYKAVLDPNQNNMSSWDSMKEVLLTKATSITDTT
DQKAILYLDKCFCGLEFCMERAALRVQSCLKRIKLEDCATDVSIKYLPKETQAAHCLVGH
IHLEKENLNRMEITMGNILQTCQEVISKHVNKSRQLRQILKTTEMISSEHCLCDQNIYNE
KALQVSCLQFFLDASTTTELSETNIVELMTNAIFPILLDTIIKGDPRVKEANVIWVQPEL
TCTVQNSSAEQNGELALEITVEKAAAAECGGTWRVAMDACVPVMDLIDTTRSTPYNIQEV
YEVFGISCAFDRVKQHLSKAVGMVTKSVLTEHLTTVASSMTCTGSLHGFGRSGCKATLQS
LKIQAPFMEATLSRPIQCFRKSAEKVDSDQLANIVSACSWGNQAAIGTASTFEIHWKDEN
QSASNKILGGYGLYDFLATVETIGAAEQNTVTPHSSCLYDVDKIPEDQVQEDEVICLGEN
LPISWTDQPKADSLLLDFKGRRTGIHSTRQERQGMQNKSNWNSAANWKNGRLGGPLHSAF
AGSTSSGGWNKKRFSGQVFERKQPNHNWTSAVTHQGDKPSWCSKNVAGAQKYGIAESSSS
AGCTRKNSGAGRGGGRGMWKSGAHHGGGNSRNSRAQNNCIARQGGISYNFTPVEQQIYAQ
VEPIMKNVKRIIRESSRDGMKLSLDDEMFIVNNVLMYHPEKEEKMSGQGNYIMVAKHQTF
HSSRCLYVATSDGSSQDFSYKKCLENFIRIHYPDAADSFCRKYFK
NT seq 4638 nt   +upstreamnt  +downstreamnt
atggcggacgacgacccgtcggcggcagcagcagcagctggagtgcacatcccgcagggg
tccatccgccgggtcaagcttagcgtcgcaagcaacgaggaaatcctcaaggcgcagcca
gtggacgcattaggcaagcccttcccgatcacgcatggcagccagctccaggacaatccc
tcgctggggctgcctctgcaggttggcagctgcgagtcatgtggcgccacccaaatcgac
aaatgtgaaggccatttcggcttcatcgagctacccgcgcccatctaccaccctagccac
gtcaccgaactggggaagatactcaacatcttttgcctctgctgcctccgcctcaagaaa
cccaacaagggcactgggaaggaaaggaaattcacttcatgttcctattgtccggatatc
ccaccattgtgtgtcactcaagttaagaaatccaatggcgcccgtagcttggaactgaaa
gcaccattaaaggaagtggttggtgatggattttggagcttccttgatcagtttggcttc
cacacgaagcgggcatgtcaccgccgtcccttacacccaaaagaggttcagaacataatg
caaaaaatctctgaagaaaaaagaatgaggcttgcttctaggggatataatcttcagaat
ggatttattatgagttacatctgtgttcccccgaattgcctgcatgtttcaaatctttta
gacaacaacacagccatgtgcccttttgacacatcaaaagacttgttgcgaaaagttcta
cgtataatagaacagatcaaaagctcaagtattagccacccaaacttcgaagcaagtgag
gtaggtgaagatgatcttcaggtagctgttgccaattacatcaatatgggaggaacagca
aagggtacccaaagtgtcacctttactaagcctgaaccaaaacagtggcagcaaaggatg
aaggcactcttcatcagtaagagttcaagcttcacgtgccgtgcagtgatcactggtgac
ccatacattggtcttgatgtagtaggggtgcctgatgaagtagcaggaagaatgtcagta
gaagaacatgtcacagactacaacattgctagactgcaagtcatgacggataaaggacta
tgtctgacgtacactgatgtcaattccaacacatatgacttgagtggggagaaaggaagc
aagaaacgcaccacgctgagggttggtgaaaccgtagaccgaagagtccttgatggagat
ctggtctacctcaatagatcaccaagcattgacaagcactcaattcaagccttatatgtc
catgtccatgatgaccacaccataaagatcaacccactcatctgtggcccacttggagca
gattttgatggcgactgcgttcacatcttcttcccaagatcagtttcagcaagagtcgaa
gctacagagctcttcaccgtggagaatcagctggtgaactcccacaatgcgaagctgaac
tttcagatcaagaatgactgcttactagctctgaagttaatgtgtgacagaaggtattct
agacaagaggcaaaccaaattgccatgttcttgccagggattattccacatggtgatcat
tattggactattcctcagattctacagactaccggtgcactaacaaccttactggcaagc
caaacaaacaaagaatctgttggatccttagtaactgccatcatctcatcaactcattca
gataagggtccaagggaggccatgaagcttctaaatctactacaacccctcctaatggaa
tcactgcttatggatggtttcagcataagcttgagagattttgatgtcccaagtgcaatg
cagaaggtaattgaaagtacttcgcttgagctcgatgaatatagagaatcaattgtggac
ttcattgcccatgcttctgcccttggtctgctggttgaccccaaaagtgattcagctctg
agaaaattagttgagcagcttggtttcttgggccgccaactgcaaaataatggcacacta
tactctggcaacttagtggaggtttgctacaagtttctgaacaagtctagcggaagcacc
aagtgttatgatcctttaaaggcgcatgatgttgttaggagttcattttacaatggttta
aacccacatgaggaactactccattcaatatcagtaagggaaaagatcgagcgctcatca
tctaaaggactagcagaacctggcaaccttttcaagaacatgatggcaatactccgggat
gtcatagtatgctatgatggaaccataagaacttcatgcagcaaattgattgtacaattt
tgctcgacaaatgcatcaaggcctgtgacaccaggtgatcctgttggtatcttggcagcc
actgcagttgcaaatgctgcatataaggcagtgttagatccaaatcagaacaacatgtcc
tcctgggactcaatgaaggaagtacttcttaccaaagctacctctataactgataccact
gaccaaaaagcaattctgtatctagacaaatgcttttgtggacttgaattctgcatggaa
agagcagcacttagggtacaatcctgcttaaaaaggatcaaactagaggattgtgccact
gacgtttccatcaaatacctgccgaaagaaactcaagcagcacattgtcttgttggtcac
atacatctagaaaaggagaatttgaatcgaatggagataacaatgggaaatattcttcaa
acatgtcaggaagttattagtaaacatgtaaacaaaagtagacagctgaggcaaattttg
aagacaactgaaatgatttcaagtgaacactgtttgtgtgaccagaatatatacaatgag
aaagccttgcaagtttcctgcttgcagtttttccttgatgcaagcaccaccacagaacta
tctgaaactaatattgttgagctgatgaccaatgccatttttcctatactcttggacacg
attataaaaggtgatcctcgagttaaggaggctaacgtaatatgggttcaaccagaacta
acgtgtacggtccagaactccagtgcagaacagaatggggaactggcactggaaatcaca
gtggaaaaggcggcggctgcagagtgtggtggcacctggcgagtagcaatggatgcatgt
gtccctgtgatggatctcattgacaccaccaggtctacgccttacaatatccaagaagtc
tatgaagtgtttggcatttcctgtgcctttgatagagtcaagcagcacctttccaaagcc
gttggaatggttacaaaatcagttctcacagagcatctgacaactgtggcaagcagtatg
acctgcacaggtagcttgcatggcttcggtagatcaggttgcaaggccacattacaatcc
ctgaagattcaggcgccatttatggaagctacattatctagaccaatacaatgctttcgg
aagagtgcagagaaggtcgactctgatcagctggctaatattgtatcagcttgctcttgg
ggtaatcaagcagcgatcgggactgcctcaactttcgaaattcactggaaggatgagaac
cagtctgcaagcaacaaaatacttggagggtatggtttgtatgacttcctcgcaacagta
gaaacaataggagctgctgaacagaacacagtgactcctcatagttcatgcttgtatgat
gtcgacaagattccagaggatcaagttcaagaggatgaggtgatatgtttgggtgaaaac
cttccaatctcctggacagaccagccaaaagctgattccctactgcttgattttaagggt
aggaggactggaatacacagcactagacaggaacgccaaggaatgcaaaataagagtaac
tggaactcagctgcaaactggaaaaatggtagactgggcggtcctctgcattctgctttt
gcaggatcaactagctctggcggatggaacaagaaacggtttagcggccaagtgtttgag
agaaagcaaccaaatcataactggacctcagctgtgacacaccaaggtgacaagccaagt
tggtgtagcaaaaatgttgcaggcgcacagaaatatggcattgcagaatcatctagctca
gctggatgcactaggaagaatagtggtgctggtcgaggtggtggtagaggcatgtggaag
tcaggagcacaccatggaggtggtaacagcaggaactcgagagcccagaataattgcatt
gctagacaaggaggtatcagttataatttcacaccagtggagcagcaaatatatgcacaa
gttgaaccaatcatgaaaaatgtaaagaggatcatccgtgaatcaagcagggatggcatg
aagctttctctagatgatgagatgttcatcgtcaacaatgttctaatgtaccacccggag
aaggaggagaagatgtccggtcagggcaattacattatggttgctaagcatcaaactttc
catagcagcaggtgcttgtacgttgcaacctcagacggatcaagtcaagatttctcctac
aagaagtgcctagagaacttcatcaggattcactaccctgatgctgcggactcattctgc
agaaagtacttcaaatga

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