Panicum virgatum (switchgrass): 120642363
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Entry
120642363 CDS
T07260
Name
(RefSeq) CLIP-associated protein-like
KO
K16578
CLIP-associating protein 1/2
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120642363
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pvir04812
]
120642363
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
120642363
Cytoskeleton proteins [BR:
pvir04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
120642363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
HEAT_EF3_N
CEP104-like_TOG
XMAP215_CLASP_TOG
HEAT
HEAT_EZ
Vac14_Fab1_bd
TOR1L1_N
Adaptin_N
PDS5
Sec7-like_HDS
INTS1_R4
TTI1
UTP20
ParcG
V-ATPase_H_N
HEAT_DAAF5
MMS19_C
Dopey_N
DUF7217
ARM_LIN
BP28CT
Motif
Other DBs
NCBI-GeneID:
120642363
NCBI-ProteinID:
XP_039774776
LinkDB
All DBs
Position
7K:complement(38879476..38897011)
Genome browser
AA seq
1443 aa
AA seq
DB search
MEAALEAARAKDTKERLAGVERLHEALDAAARRGLTGAEVTALVDTCMDLTRDANFRIAQ
GGLQALSAAAVVAGEHFKIHLNALVPAAVERLGDGKQPVRDAARQLLITLMEVSSPTIIV
ERAGSYAWIHKSWRVREEFVRTVATAVGLFASTEISLQRVLLSPVLQLMNDSNQSVRDAA
ISCIEEMYKHMGSQFHEELQRHNLPSYMLKEINYRLDKIEPKVRSSDTGMQYKAAESRSV
SANPKRGSPRTKSIPRESTLFGGDTDITEKPVEPIKVHSEKELLREFEKIAATLVPEKDW
SLRIAAMQRIEALVYGGAIDYPSFLMLLKQLIPPLSTQLSDRRSSIVKQACHLLNILSKE
LLGDFEPCAEQFIPMLFKLVVITVLVIAESADTCIKTILRNCKVARILPRIVDTAKNDRS
AILRARCCEYALLVLEYWADAPEIQRSADLYEDMIKCCVADAMSEVRATARTCYRMFAKT
WPERSRRLFMSFDPAIQRIINDEDGGVHKRYASPSLRDRVAQPSRAPSHASGTHVPGYGT
SAIVTMDKSAAISSDSSFSSNSLRLSQSKTIGRSSERSLESVLNSSKEKVSAIESLLKGV
SISGQNFSSARSTSLDLGVDPPSSRDPPVPLAAPASNVLSLQNSALLDSSLPAITAASSR
NGGSRLLDTMTTQLATKERSRSPYLSSMSSESMSGLSLPYSRRSSERLQEGSRMDEGYDI
RSARRIPQMHLEKNYVDMPYRDATHRDSHNNHVPNFQRPLLRKQVLSRASASGRHSFDDS
HVPSGDVSGYTDSLASLNDALSEGLSPSSDWVARVSAFDFIRNLLQQGQKGIQEITQNFE
KVMKLFFRHLDDPHHKVAQAAFTTLAEIIPACKKPFESYVERILPYVFSRLIDPKELVKK
PCSSTLDIVGRTYAIDMLLPALVRSLDEQRSPKAKLAVLEFANKSFSKYTVDSDGYSNSG
FLKLWLSKLAPLVNEKNAKLKEASISGIIAVYSHFDSTAVLNFILSLSVEDQNLLRRALK
IKTPRIEVDLVNYLQSKKERPRPKSYDQADFGTSSEDGYALTSKKSYPFGRYSSSSLDAE
GGKKTSIMQESTPHNVSIGRTTSDMSMDHAIQSLEPSTGTEAHLTRSRELKNNSSSVVEA
ARSWTNYPEKTDASLDGETASSTPRLDFSRFLTSDGHNTVGSTTEESVQEGDMIVSLSSI
KTSLHIDNGLSIPQLLHQISNDSEVSSAEKREALQRLVDASLDNNSSIWAKYFNQILTTV
LEVLDDSDSSTRELALSLIAQMLNNQKDAIEDSMEIVLEKLLHVTKDVVAKISNEANQCL
NVLLAKYDPFRCLAVIVPLLVSDDEKILVVCINCLTKLVGRLSQEELIDQLPTFLPALFD
AFNNQSPDVRKTVVFCLVDIYIMLGKAFAPYLEGLSSTQLRLVTIYANRISQARSGKPID
SNQ
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggcgctggaggcggcgcgcgccaaggacaccaaggagcgcctggcgggggtc
gagcggctgcacgaggcgctcgacgccgcggcgcgccgcgggctcacgggggccgaggtc
accgcgctggtggacacctgcatggatctgacgcgggacgccaacttccgcatcgcccag
ggcggcctccaggcgctctccgccgccgccgtcgtcgccggcgagcacttcaagatccac
ctcaacgccctcgtcccggccgccgtcgagcgcctcggggacggcaagcagcccgtccgc
gatgccgcgcgccagctcctcatcacgctcatggaggtttcttcgccaacaataatagtt
gaaagagctggaagttatgcatggattcataagagttggagggtgcgagaagagtttgta
cgtacggtggccactgcagttgggctatttgcttctacagagatttccttgcaacgagtt
ttgctttcacctgtcctgcaattgatgaatgattcaaaccaaagtgttagagatgctgca
atctcttgtattgaggagatgtacaagcatatgggttcacaattccatgaagagttgcag
cgccataatctgccttcgtacatgctaaaagaaataaattataggttggataaaatagaa
ccaaaggttcgatcatctgatactggaatgcaatacaaggcagcagagtctagatctgtt
agtgctaatccgaaaagaggcagcccaaggacaaaaagcataccaagggaaagtacacta
tttggaggtgacaccgacataacagaaaaaccagtggagccaataaaagttcattctgag
aaagaattacttcgggagttcgagaagattgcagctaccctcgttccagaaaaggattgg
tctttacgtattgctgccatgcaaaggattgaagcccttgtttatggaggtgcaattgat
tatccctcatttcttatgctcttgaagcaactgattcctccattgtccactcagctgtct
gatcgacgttctagcattgtaaaacaggcatgccatctacttaatatactatccaaagaa
ctccttggtgattttgagccatgtgctgaacaatttatcccgatgctttttaagcttgtt
gtcataacggtgcttgtaatcgctgaatctgcagacacatgtattaaaactatcctgcgg
aattgcaaagttgcaaggattcttcctcgcatagttgacactgcaaagaatgaccggagt
gcaatcctccgtgcgagatgctgtgagtatgcacttctggtactggagtattgggctgat
gccccagagatacaacggtcggctgatttatatgaagatatgataaaatgctgtgtagca
gatgcaatgagtgaggttcgcgcaactgcaagaacttgctatagaatgtttgcaaagaca
tggcccgagcgttcacgacggctttttatgtcattcgatcctgcaatacagaggataata
aatgatgaagatggtggtgtgcacaaaaggtatgcttctccctcgttgcgtgatagggtt
gcgcagccttctcgtgctccatctcatgccagtggtacacatgtacctggatatggcact
tcagctattgttacaatggacaagagcgcagctatttcttcagattcatctttttcatca
aacagtcttcggttatcacagtccaagacgattggcagaagttctgaaagaagccttgag
agtgtgcttaactccagcaaagaaaaagtttctgccattgagagtttgctgaaaggtgtc
agtatatcagggcaaaatttctccagtgcacgctccacaagcttggatcttggagttgat
cctccatcatctcgtgatcctcctgtgccacttgcagcgccagcatcaaatgttttgtca
ttgcagaactcagcattgctggattcatcccttcctgccatcactgctgctagttcacga
aatggaggttcacgcttattggatacaatgacaacacaattggctaccaaagagcgatca
agatcaccatatttgagcagtatgtcatctgagtccatgtctggcttgtcattgccttac
tcaagaagatcttcggagaggcttcaagaaggtagccgcatggatgagggttatgatatt
cgttcagctaggcgaatccctcaaatgcacttggagaaaaactatgttgatatgccttat
agggatgccacccacagagattcacataataaccatgtcccaaatttccagagacctctt
ctacggaagcaagtactgtcaagggcttctgccagtggcagacacagctttgatgacagc
catgtaccatctggtgatgtgtctggctatacagattctctggcttctctaaatgatgca
ctttctgagggtctcagccctagttccgactgggtagcaagagtttcagcttttgatttt
attcggaatttattgcaacaaggccagaaaggtattcaagaaatcacccaaaattttgag
aaggtcatgaagctcttcttccgtcatttggatgatcctcatcataaggttgcacaggca
gctttcactacacttgcagagatcatcccagcttgcaagaagccatttgaaagttatgtc
gagcggatattgccatatgtattttcgcggcttattgatccaaaagagttggtgaaaaaa
ccatgttcctcgacattggatattgttggtcggacatatgctattgatatgttactacct
gcgcttgtacgctcattagatgaacagagatccccaaaggcaaaattggctgttcttgag
ttcgcaaataaatcattcagcaagtacactgtagattctgatggttatagtaacagcggc
ttcctcaaactatggctttcaaaattggcacctttagtaaatgaaaagaatgcaaaattg
aaggaggcatctatttctggtatcatagctgtttattctcactttgattcaacagcagtg
ctaaattttattctcagtttatcagtggaagatcaaaacctcttgaggcgagccctgaag
atcaaaacacctcgtattgaggttgatctggtgaactacttgcagagcaagaaagaacgt
ccacgccccaaatcttatgaccaggcagattttggaacttcttcggaagatggctatgca
cttacatccaagaagagctatccttttgggcggtattcttctagttcccttgatgctgaa
gggggaaagaaaaccagtataatgcaagaatcaactccgcacaatgtctctataggtcga
acaacttctgatatgagcatggatcatgctattcaaagcttagaaccatcaacaggaact
gaagctcatttaactaggagcagagagctgaagaataacagtagttcagttgtggaagct
gctcgctcttggacaaactaccctgaaaaaactgatgcctccttagatggtgaaactgct
agcagtactccacggttagatttcagccggtttcttacttctgatgggcacaatactgtt
ggttcaaccactgaagaaagtgttcaagagggagatatgattgtgagtcttagttctata
aagaccagcctgcacattgacaatggtctgagcataccgcaacttcttcatcagataagc
aacgatagtgaagtttcaagcgcggaaaagcgggaagcgctgcaacggttggttgatgct
tccctcgataacaacagctccatttgggcaaagtacttcaatcaaatcttaacgactgtg
cttgaggtattggatgactctgattcatccacgagggagcttgctctgtccttaattgct
cagatgctcaacaaccagaaagatgcaattgaagactctatggagattgttctcgagaag
ctccttcatgtgaccaaagatgttgtggctaagatttcaaatgaggcaaaccaatgctta
aatgttctgttggcaaaatatgatcctttcagatgtcttgctgttatagtacctttattg
gtcagtgatgatgagaagatacttgttgtttgtatcaactgtttgacaaagcttgttgga
cgcctttcccaagaggaattgatcgatcaattacctacgtttttgccagcgctatttgat
gcttttaacaaccaaagtccagatgttcgaaagactgttgtgttctgcctggtggatatc
tacatcatgcttgggaaagcattcgctccatacttggaagggcttagcagcacgcagctg
cgcctagtaaccatctatgctaaccggatttcacaggcgaggtcaggcaaaccgattgac
tctaaccaatga
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