Panicum virgatum (switchgrass): 120642371
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Entry
120642371 CDS
T07260
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1
KO
K18998
RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:
3.1.3.16
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120642371
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120642371
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
120642371
Protein phosphatases and associated proteins [BR:
pvir01009
]
HAD phosphatases
Fcp/Scp phosphatases
120642371
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
120642371
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Ortholog
Paralog
GFIT
Motif
Pfam:
SPOC_CPL1_2
dsrm
NIF
Motif
Other DBs
NCBI-GeneID:
120642371
NCBI-ProteinID:
XP_039774792
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All DBs
Position
7K:40409474..40423733
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AA seq
942 aa
AA seq
DB search
MIKSVVYYGNIPVGEAELWPKGLTDLSWARAIRVDRLSPPSERCPPLAVLHAVAAGARCL
VMESSPTSTADEPPPPLVAMHTACLRDNKTAVFPLGAEEIHLVAMTSKRNLPNHACFWGY
KVPLGLYNSCLSMLNLRCLGIVFDLDETLIIANTTRSFEDRIDTLQRKLGNETDPQRISG
MLAEIKRYQDDKSILKQYIESDQVTDGGEVYKVQSEVIPPLADNHQQPMTRPIIRLQEKN
IILTRINPSIRDTSVLVRLRPAWDDLRSYLIARGRKRFEVYVCTMAERDYALEMWRLLDP
DSKLINSVQLLDRLVCVKSGSKKSLLNVFHDGSCNPGMALVIDDRLKVWDEKDQRRVHVV
PAFAPYYAPQAEANFPIPVLCVARNVACNVRGGFFKDFDEGILPRISEVRYEDEMDGIPS
APDVSNYLISEDENAAISNANKDPHAFDGMADAEVEKRMKEASSSFQVVNPITTDVHVMS
VAAKEHFVTPAFSSTPMAPPLGMIPLNNEHVPQPPSFSQPVAQSGLVDPSQGSPAREEGE
VPESELDPDTRRRLLILQHGQDTREAAPPFPAGPPAQVSVPPVQSHGNWFSLEEMNPRNL
NKPSTDFHLESDSVNYDKKQPQHPSYFPVGDNPTSADRYSCKNQRYPPQPRHSEDHQVLH
NHAPATYRSFSGEDIATRHAPSRQRSSQMESGRYFIQYGGITGVLEEIAVKCGFKVEYRS
TLCDTTELQFSIEVWIFGEKIGEGIGKTRKEAQCQAADTSLRNLADKFLSWDPDKMTVVK
ENGFNSYSNSHRYPGSNRDDMLPVASTSDESRYINDRIDNLRKPGGSVAALKELCTVEGY
NLVFLSQPSTDGSAGKEVRAQVEIGGQILGKGVGATWEEAKLQAADEAYGTLKSMLGQLS
QRQSASPRSFAPNFNKRFKPDFSQTMQRIPSSRYSRDDNRFP
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagtccgtggtttattacgggaacatccccgttggggaggcggagttgtggccc
aagggcctgacggacctgtcatgggcgcgggcgatccgggtggaccgcctgtcgccgccc
agcgagcggtgcccgccgctcgccgtgctgcacgccgtcgcggccggcgcccgttgcctc
gtgatggagtccagtcccacatcaacggctgacgagcccccaccgccgctcgtcgccatg
cacaccgcttgcctcagggacaacaagacagcggtttttccacttggagcggaagagata
cacttagtggcgatgacttctaagaggaacttgccaaatcatgcatgtttttggggatat
aaagtaccattgggattatacaactcgtgcttgagcatgttgaatcttcgatgtcttggc
attgtgtttgaccttgatgaaacattaattattgccaatactactcggtcttttgaagat
aggatagatacacttcagagaaaattgggtaatgagactgatcctcagcgcatcagtggt
atgttggcagagatcaagaggtaccaagatgacaagtctatactaaagcagtatatagaa
agtgatcaggttactgatggcggcgaagtgtataaagtacaatccgaggtcatcccaccc
ttagctgacaatcatcaacaacctatgacacgcccaattataaggttacaagagaaaaat
attatcttgacacgtataaatccatcgataagagatactagtgtcctggtacggttaaga
ccagcatgggacgaccttcggagctacttaattgcaaggggtcgcaaacgttttgaggtg
tatgtgtgcacaatggccgagagggactatgctttggaaatgtggaggttgcttgatcca
gattcaaaattgataaactctgtccaacttcttgacagacttgtctgtgtcaaatctggg
tcaaaaaaatcattgctaaatgtattccatgatggatcttgtaaccctggaatggccctt
gttattgacgaccgtttgaaagtttgggatgagaaggatcagcgtagagttcacgttgtt
cctgcatttgctccatattatgcccctcaggcagaggcaaacttccctattccggttctt
tgcgtcgcccgaaatgttgcttgcaatgttagggggggtttcttcaaagattttgacgag
ggcatcctaccccggattagtgaggttcgttatgaagatgaaatggatggcattccttct
gctcctgatgttagcaattatttaatttcagaggatgagaatgctgcaatttcaaatgca
aacaaagatccacatgcttttgatggtatggcagatgcagaggttgagaagaggatgaag
gaagcttcttccagctttcaagttgtgaatccaataacaactgatgtccatgtgatgtca
gtagctgcaaaagagcactttgttacccctgcattctcatctaccccaatggcaccacca
ctaggcatgattcctttgaataatgagcatgttccccagcctccttcattcagccagcca
gttgctcaatctggtcttgtggatccttcacaaggttctccagctagagaagagggtgag
gttcctgagtctgagttggatcctgacactcggagaaggcttctcatattacagcatggt
caagacacaagagaagctgcaccgccatttcctgctggacctcctgcacaagtctcagta
ccgccagtgcaatctcatggaaattggttttccttagaggagatgaatccaaggaacctg
aataagccttcaacagacttccatttagagtctgactctgtaaattatgataagaagcaa
ccacagcatccatcatacttccctgttggggacaaccctacatctgcagatagatatagc
tgtaagaaccagagatatcctcctcagccacgtcacagtgaagatcatcaagtgcttcat
aaccatgcaccagcaacatatagatctttttctggcgaggacatagcaactcgtcatgct
ccttcaagacaaagaagcagccaaatggaatcaggaaggtacttcatacaatatggcgga
atcacgggtgtgttggaggagattgcagtaaagtgtggatttaaggtggagtaccgatca
actttatgtgatacgacagagttgcaattctccattgaggtttggatttttggagaaaaa
ataggtgaaggaattgggaaaacaaggaaggaagcacagtgtcaagctgctgatacatcc
ttaagaaatctggcagacaaatttctatcatgggacccagataagatgacagttgtgaag
gagaatggttttaatagctattcaaactcacacagatatccaggaagcaatagagatgat
atgttaccagttgcaagcacttcagatgagtctagatatataaatgacagaattgacaac
ttaagaaaacctggtggttctgttgctgctcttaaggagctttgtacagttgaagggtat
aatttagtattcctatcccagccttctacagatggttcagcaggtaaagaagttcgtgct
caggtagaaataggtgggcaaatcctagggaaaggagttggagcaacatgggaggaagct
aagctgcaggctgctgatgaggcttatggaacgttgaaatccatgctgggacaactttct
caaagacagtctgcctctccaaggtcatttgcgcccaattttaacaagcgcttcaagcca
gatttctcgcagacaatgcaaaggattccatcaagcagatattctagagacgacaatcgt
tttccttga
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