Panicum virgatum (switchgrass): 120642379
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Entry
120642379 CDS
T07260
Name
(RefSeq) eukaryotic translation initiation factor-like
KO
K03260
translation initiation factor 4G
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120642379
03012 Translation factors [BR:
pvir03012
]
120642379
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120642379
mRNA cycle factors
Stress granule specific factors
120642379
Translation factors [BR:
pvir03012
]
Eukaryotic type
Initiation factors
eIF-4
120642379
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MIF4G
MA3
DUF5998
Motif
Other DBs
NCBI-GeneID:
120642379
NCBI-ProteinID:
XP_039774811
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All DBs
Position
7K:complement(38255330..38261490)
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AA seq
788 aa
AA seq
DB search
MQPDQPVISLRPGGGGGPRAGRLFSPAFAAATSGSSDFLRPHGGGASGISKIGDSHFEPR
ERVRYTRDQLLELREIADVPEGILRIKQEIDTELHGEDQSWLRNDSTVQVQAQAPAQTQA
HNRYAEADNRDWRARSVQPPPANEEKSWDNIREAKEAYASGGRHQEQVSRQDQLSSQFAS
KAQVGPTAALIKAEVPWSARRGNLSEKERVLKTVKGILNKLTPEKFDLLKGQLMEAGITT
ADILKDVISLIFEKAVFEPTFCPMYAQLCSDLNEKLPSFPPEEQGGKEITFKRVLLNNCQ
EAFEGASSLRAEIAKLTGPDQEMERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHI
VMELLGSGPDKKPCPEEEDVEAICHFFNTIGKQLDENPKSRRINDTYFIQMKELTTNPQL
APRLRFMVRNVIDLRSNNWVPRREEIKAKTISEIHSEAEKNLGLRPGAAAVIRNGRSSPG
PLSPGGFSMNRPGTGGMMPGMPGSRKMPGMPGLDNDNWEVPRSRSMPRGDPLRNQTPLLN
KLSTVHKTSSINSRLLPQGSGAALIGKSALLGTGVPASRPSSFAAGPTPAQTTPSPKPLS
AAPAVAPVPDKPASAPKGNSAELQKKTVSLLEEYFGIRILDEAQQCIEELQSPGYYPEIV
KEAINLALDKGTNFVDPLVRLLEHLYTKKIFKTEDLETGCMLYSALLDDIGIDLPKAPTQ
FGEIIARLSLSGSLRFEAVEEILKKMEDTFYRKQVFNAVMKTMETNPSGQAVLGSHAAVI
DACKSLLE
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgcagccggatcagcctgtgatcagcttgcgccccggcggcggcggcggcccgcgcgcc
ggccgcctcttctcccccgccttcgccgccgctacctccggctccagcgacttcctccgc
ccgcacggcgggggcgcctccggcatctccaagattggtgattcacattttgagccgcga
gagcgtgttcgctatacaagagatcaacttcttgagctccgtgagattgctgatgtgcct
gagggcattttaagaatcaagcaagagattgatacagagcttcatggtgaagatcagagc
tggcttcgcaatgactcaactgttcaagtgcaagcccaagccccagcccaaacacaagca
cacaatcggtatgctgaggcagataaccgtgattggcgtgcacgctcagtacaaccacct
ccagctaatgaagagaaatcttgggacaatattcgtgaggctaaagaagcatatgcttct
ggtggtaggcatcaagagcaagttagcaggcaagatcagttaagctcccagtttgcttca
aaagctcaggttggccctacagctgctcttattaaggctgaagtaccttggtcagcccga
agaggcaatctctcagagaaagaaagagtcttgaaaactgttaaaggtatactgaacaaa
cttacaccagagaaatttgatctactcaagggtcagctaatggaagctggaatcactact
gctgatattttgaaggatgttatttctctcatatttgagaaggcagtttttgagcccacc
ttctgtcctatgtatgctcaactttgttctgatctcaatgagaagctcccatcattccct
cctgaagaacagggtggcaaagagatcacatttaaacgtgtgctattgaacaattgccag
gaagccttcgaaggcgccagcagcctaagagctgagattgcaaaattaactggtcctgac
caagagatggagagaagggacaaagaacggttggtcaaacttagaacacttggaaatatt
cggctaattggtgagctactcaaacaaaaaatggttcctgagaaaatagttcatcacatt
gttatggagttgttggggtctgggcctgataaaaaaccatgtcccgaagaggaggatgtt
gaggctatctgtcatttcttcaatacaattggtaaacagcttgatgagaacccaaagtct
cggcgaatcaatgatacttacttcatccagatgaaggagctaacaacaaaccctcagctt
gcacctcgattgaggttcatggttcgcaatgtgattgatctccggtcgaataactgggtg
cctcgacgggaggagattaaggccaagacaatcagtgaaattcactctgaggctgaaaag
aatcttggtttgcgacctggagcagcagcagtcattaggaatggccgtagttcaccagga
cccctttcacctggaggtttttcaatgaatcggccaggaactggaggtatgatgccaggg
atgcctgggtcaagaaagatgcctggaatgcctggattagataatgataactgggaagtt
ccgcgttctagatcaatgccaagaggcgacccacttcgcaaccagaccccattgcttaat
aagctgtcaacagttcacaagacatcatctattaactccaggcttcttcctcaaggtagt
ggagcagcactaattggcaagagtgcacttttgggaactggtgttccagcatctcgtcct
tccagctttgctgctggtccaacaccagctcaaaccacgccatctccaaaaccgttaagt
gcagctccagccgttgccccggtccctgataaaccagctagtgctcccaaggggaactct
gctgagcttcaaaagaaaacagtgtctcttcttgaggagtattttggtatacgtattttg
gatgaagcacaacaatgtattgaggagttgcagagtcctggttactaccctgaaattgtt
aaggaagctatcaatctcgccctagataaaggtaccaattttgtcgatcctcttgttagg
ctactggagcatctgtacacaaagaaaattttcaagactgaagacctggaaactggatgc
atgctgtacagcgctctgctggatgacattggtatcgaccttcctaaagctccaacacaa
tttggtgaaattattgctcgtctgagtttgtcgggcagcttgagatttgaagctgtggag
gagattttaaagaaaatggaggataccttctaccgcaagcaagttttcaacgctgtcatg
aaaaccatggaaacaaacccgtcaggtcaggctgtcttgggttcacatgctgctgtaatt
gacgcatgcaaaagccttttggaataa
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