Panicum virgatum (switchgrass): 120642473
Help
Entry
120642473 CDS
T07260
Name
(RefSeq) SNW/SKI-interacting protein A-like
KO
K06063
SNW domain-containing protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120642473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120642473
Spliceosome [BR:
pvir03041
]
Complex B
Other components
Prp19-related factors
120642473
Complex C
120642473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SKIP_SNW
Motif
Other DBs
NCBI-GeneID:
120642473
NCBI-ProteinID:
XP_039774958
LinkDB
All DBs
Position
1K:complement(52209756..52212597)
Genome browser
AA seq
603 aa
AA seq
DB search
MGTLKDLLPAPKTSASPFYDHSSDPWFKERYGGESAQASAAARPAGAARAIPPYGKRTGF
VPRRPEDFGDGGAFPEIHVAQYPLGMGRRDDKGGSKILALTVDAHGSVAFDAVVKQGENA
CKIVYSKHSDLVPKTATSDSQAPDDDDEEQKQIEETTERTKAALEKVVNVRLSAAQPKNV
PTHDSESKFIKYKPSQQSAAFNSGAKERIIRMSEMAVDPLEPPKFKHKRVPRASGSPPVP
VMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKLS
EALYVAEQKAREAVQMRSKVQRELMLKEKERKEQELRALAQKARMERTGGPPAPSAVPAG
GGRGTIDAIDEDMDMEQPREPRRESREEREARIERDRIREERRRERERERRLEAKDAAMG
KKSKITRDRDRDISEKIALGMASTGGSKGGEVMYDQRLFNQDKGMDSGFATDDQYNIYSK
GLFTAQSTMSTLYRPKKDGDSDVYGDTDEQLEKVMKTERFKPDKAFTGASERTGKRDRPV
EFDKQEENDPFGLDQFLTEVKKGKKAVEKIGGGGTMKASGGSSMRDDYDGGSGRSRINFE
RGR
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggggaccctcaaggatctcctcccggcgcccaagacgtcggcgtcccccttctacgac
cacagcagcgacccctggttcaaggagcggtacggcggggagtcggcgcaggcgtcggcc
gcggcgaggcccgcgggcgccgccagggccatccctccgtacgggaagcggacggggttc
gtgccgcgccggccggaggactttggggatggcggcgccttcccggagatccatgtcgcg
cagtatccgctcggcatgggccgccgcgacgacaagggcgggtccaagatcctcgcgctc
accgtcgacgcgcacgggagcgtcgccttcgacgccgtcgtcaagcagggcgagaacgcc
tgcaagatcgtctactccaagcacagcgacctcgtgccgaagaccgccacgtccgattcg
caggcgccggacgacgacgacgaggagcagaagcagatcgaggagaccacagagcggacg
aaggctgccctggagaaggttgtcaacgtccgcctttcagctgctcagcccaagaatgtg
ccgacacatgattctgagtccaagtttatcaagtataagccgtcacagcaatcagcggcc
ttcaattcaggtgccaaggagaggatcattcggatgtcggagatggcagtggatcctctt
gagccaccaaagttcaagcacaagcgtgtgccccgggcgtctgggtcaccacctgtgccg
gtgatgcactcgccaccgcggccagttacagtgaaggatcagcaggattggaagatccca
ccatgcatttctaactggaaaaatcctaagggttacacgattccacttgataagaggctg
gcggctgatggaagagggctacaggaggtgcaaattaatgacaactttgcaaagctttct
gaagcattgtatgtggcagaacagaaggcgagggaggcagtacagatgcgctccaaggtg
cagagggaactgatgctgaaggagaaggagagaaaggagcaagaactgagggctcttgca
cagaaggctcgcatggagaggactggtggccctcctgcaccatcagctgtgcctgctggt
ggtggcaggggaacaattgatgctatcgatgaagatatggatatggagcaaccgcgtgag
ccgcgcagggagagtagagaagagagggaagcgaggattgaacgtgatagaatccgtgag
gagcgcagacgtgagcgggagagggagagaaggctggaagccaaggatgctgcaatgggc
aagaagagtaagatcacgagagacagggatcgtgacatcagtgagaagattgctctgggt
atggcaagcactggtggctccaaaggtggtgaggtcatgtatgaccagcggctgttcaac
caggacaaggggatggactctgggtttgccacagatgatcagtataacatctactcgaag
gggctcttcacagcgcagtcaacgatgtctacgttgtacaggcctaagaaggatggtgat
tctgatgtgtatggtgacacagatgaacagttggagaaggttatgaagactgagaggttc
aagcctgacaaggcatttactggtgcttctgagaggactggcaagcgagacaggcctgtg
gagtttgataagcaggaggagaacgatcccttcggtctggatcagttcttgactgaggtg
aagaagggaaagaaagctgtggagaagattggaggcggaggcaccatgaaggcgagtggt
gggtcctcaatgagggatgattatgatggaggatctgggaggtcccgtattaattttgaa
agggggcgttga
DBGET
integrated database retrieval system
