Panicum virgatum (switchgrass): 120642506
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Entry
120642506 CDS
T07260
Name
(RefSeq) syntaxin-81-like
KO
K08492
syntaxin 18
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04130
SNARE interactions in vesicular transport
pvir04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
120642506
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
120642506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120642506
Membrane trafficking [BR:
pvir04131
]
SNARE
Syntaxin (Qa)
Stx-rER
120642506
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GFIT
Motif
Pfam:
Syntaxin-18_N
SNARE
PAS_2
U3snoRNP10
Motif
Other DBs
NCBI-GeneID:
120642506
NCBI-ProteinID:
XP_039775000
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Position
7K:40478097..40481112
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AA seq
316 aa
AA seq
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MSRVRDRTEDFKEALRVAALSHGYTEAQMAALMSSFIIRKPPPKSPFTNAAIKTLESIRE
LERFIVKHRRDYVDLHRTTERERDNIEHEVGVFVKACKEQIDILKNRIHEEEKSGSAKTW
LGTRDESSRLDLIAHQHGVVLILSERLHSVTAQFDRLRSMRFQDAINRAMPRKKIQKKPE
IKPDEPSKSNLVLKSDVSKIGDQEVSAAPMRVQELLDDETRALQVELTSLLDAVQETETK
MMEMSALNHLMSTHVLQQTQQIQYLYDQAVEATNNVERGNKELSQAIQRNSSSRTFLLLF
FFVLTFSVLFLDWYNN
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagggttcgggacaggacggaggacttcaaagaggccctccgcgtcgccgcgctc
tcccatggctacacggaggcccagatggccgcgctcatgtcgtctttcatcatccggaag
ccgccccccaagtctccattcaccaatgcggcgatcaagacgcttgagagtatcagggaa
ctcgagaggttcatagtgaagcacaggagggactatgtggacctgcatcgcactacagag
cgagagagggacaacatcgagcatgaagttggtgtttttgtaaaagcatgcaaggaacag
attgatatcctaaagaacaggatccatgaagaagagaagagtggaagtgcaaagacatgg
cttggcactagggatgagagttcccggttggacttgatagctcatcagcatggtgtggtt
ttaattttgagtgagcgtctccactcggtaactgcacagtttgatcggcttcggtccatg
cgttttcaagacgctattaatagagcaatgccaaggaagaagattcagaagaaaccagaa
atcaaacctgatgaaccatccaagtccaatcttgttctaaaatctgatgtatcaaaaatt
ggagatcaggaagtatctgctgcacccatgagagttcaagaactattggatgatgaaaca
agagctctccaggtggagttgacaagtcttcttgacgctgtccaagaaacggagacaaag
atgatggaaatgtcagcacttaatcatcttatgtcaacgcatgttctacaacaaactcaa
cagatccaatatttatatgaccaggctgttgaagctacgaataacgtggagcgcgggaac
aaggaactatcccaggctattcagcggaacagcagcagtagaacctttctcctcctcttt
ttctttgttctcactttctccgttctttttcttgactggtataacaactga
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