Panicum virgatum (switchgrass): 120642735
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Entry
120642735 CDS
T07260
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp31 homolog
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120642735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120642735
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
120642735
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Gene cluster
GFIT
Motif
Pfam:
Nop
Prp31_C
Phage_TAC_12
Motif
Other DBs
NCBI-GeneID:
120642735
NCBI-ProteinID:
XP_039775239
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Position
7K:42170198..42175112
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AA seq
485 aa
AA seq
DB search
MASLADSFLADLDELSDNEGYPEEDNAEAAGMEDDGDDDMPDLESLNYDDLDSVSKLQKT
QRYNDIMQKVEDALQKGTDFSNQGSILEEDPEYQLIVDCNALSVDIENEIIIIHNFIRDK
YRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPL
SEENLEKTIDACDRALTLDAAKKKVLDFVESRMGYIAPNLSAIVGSAVASKLMGTAGGLG
ALAKMPACNVQLLGAKRKNLAGFSTATSQFRVGYLEQTEVFQSTPPALRTRACRLIAAKS
TLAARIDSIRGDPTGKAGRNLLEEIRKKIEKWQEPPPAKLPKPLPVPDSEPKKKRGGRRL
RKMKERYAQTDMMKLANRMQFGIPEESSLGDGLGEGYGMLGQAGSGKLRVSAGQSKLAAK
VAKKFKEKSYGSSGATSGLTSSLAFTPVQGIELSNPQAQGNPLGGGTQSTYFSETGRFSK
IRRTQ
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcgagccttgctgattcttttctagcggatcttgatgaactgtcagacaatgaaggc
tatcctgaagaagacaatgctgaggcagctggtatggaggatgatggtgatgatgatatg
cctgaccttgagtcccttaattacgatgatctggatagtgtctcaaagttgcagaagaca
caacgctataatgacataatgcaaaaagttgaagatgcacttcagaaaggcactgacttc
tccaatcaaggttccatcctggaggaggatccagagtaccagcttatcgttgattgcaat
gctttatcagtagatattgagaatgagatcatcataatccataatttcatacgtgacaag
tataggttgaagtttcctgaactggaatccctcgttcatcatccgatcgattatgcccgt
gttgtcaaaaagattggaaatgagatggatttaacacttgtagatctggaagggctttta
ccttctgcaattataatggttgtctccgtgacagcatcaacaacaagtgggaaacctctt
tctgaggaaaatttggaaaaaaccattgatgcttgtgacagagcccttacgctcgatgct
gcaaaaaagaaagtgcttgattttgtagagagcagaatgggttatattgcaccaaacctt
tctgccattgttggcagtgcggttgcctcaaaactgatgggtactgctggtggtctggga
gcacttgcaaaaatgcctgcttgtaatgttcagttacttggtgcaaagaggaaaaatctt
gctggattttctactgccacatctcaatttcgagttggctatcttgaacaaaccgaggta
tttcagagcacacctccagctctgaggactagggcttgcagacttattgctgcgaagtca
actctagcagcaaggattgattcaattagaggtgatccaactggaaaagctggacggaac
ttattagaagaaattcgtaagaagattgagaagtggcaagaaccgcctccagcaaagctt
ccaaagccacttcctgttccggactctgaacctaaaaagaagagagggggtcgtcggctt
cgtaaaatgaaagaaaggtatgcgcaaactgatatgatgaagcttgcaaaccggatgcaa
tttgggattccagaggagagctcattaggtgatggcttgggggaaggttatggcatgctc
ggacaggcaggaagtggcaagctgcgtgtgtcagctggacaaagcaaacttgctgctaaa
gtggccaagaaattcaaggagaagagctatggtagcagcggtgcaacttcaggattgaca
tctagtttggcatttacaccagttcagggaatagagttgtcaaatccacaggcccaaggg
aacccgcttggaggtggaactcaaagtacctacttttctgagactggcagattttcgaag
atcaggaggacccaatag
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