Panicum virgatum (switchgrass): 120642860
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Entry
120642860 CDS
T07260
Name
(RefSeq) ABC transporter B family member 19-like
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120642860
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120642860
04147 Exosome [BR:
pvir04147
]
120642860
04090 CD molecules [BR:
pvir04090
]
120642860
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120642860
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120642860
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120642860
CD molecules [BR:
pvir04090
]
Proteins
120642860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_29
AAA_21
AAA_22
RuvX
AAA_16
nSTAND1
Motif
Other DBs
NCBI-GeneID:
120642860
NCBI-ProteinID:
XP_039775401
LinkDB
All DBs
Position
7K:complement(5942200..5947766)
Genome browser
AA seq
1314 aa
AA seq
DB search
MVKHSGTYNNAMSREVSFSRDNHDKLYVPPRRDAPSFGYDVSVASYSHSQRYDDGGGYGY
DDDDDCEIEVRIGKPVSISGLFKYSTPLDILLLVLGCVGATINGGSLPWYSYLFGNFINK
VVNADKAQMMTDVKQISFYMVFLAAVVVIGAYLEITCWRIIGERSALRIRREYLKAVLRQ
EIGFFDTEVSTGEVMQSISSDVAQIQDVMGEKMAGFVHHVFTFIFGYAVGFTKSWKIALA
VFAVTPLMMSCGIAYKAIYGGLTARDEASYQRAGSVAQQAISSIRTVLSFVMEDRLADKY
AEWLNKAAPIGIKMGFAKGAGMGMIYLVTYSQWALALWYGSELVAKGEIKGGDAIACFFG
VMVGGRNVSFADALESGNVVRRGLALSLSYYAQFAQGTVAAGRVFEIIDRVPEIDAYDSG
GRMLSTVRGRIEFKDVEFTYPSRPEAIILYNLNLTIPASKMLALVGVSGGGKSTMFALIE
RFYDPTRGTIMLDGQDLPSLNLRWLRSLVGLVGQEPILFATSIIENVMMGKENATRQEAI
AACTKANAHTFILGLPDGYDTQVGDRGTQLSGGQKQRIALARAIIRDPRILLLDEPTSAL
DAESEALVQKSIDHLSAGRTVVVIAHRLATVRNADTIAVLDRGAVVESGRHADLMARGGP
YAALVKLASDSGRSDTSAEPSKPAAAGTDMHNSFTDESGYEMSMMSKSRHRVQTIHEEAS
PKDDASAKFSVSEIWKLQRREGPLLILGFLMGINAGAVFSVFPLLLGQAVEVYFDANTSK
MKRQVGYLAVAVVGLGVACILTMTGQQGLCGWAGARLTMRVRDRLFRAIMKQEPAWFDEE
DNAMGVLVTRLARDAIAFRSMFGDRYAVLLMAVGSAGVGLGICFALDWRLTLVAMGCTPL
TLGASYLNLLINVGPKSDDGTYARASSVAAGAVSNVRTVAALCAQGNIVQSFNRALDAPM
SKARRRSQIMGIILGLSQGAMYGAYTVTLWAGALFIKRDESKFGNVSKIFLILVLSSFSV
GQLAGLAPDTSGAPAAIAGILSILKRRPTINEDPTKRRAIKDGRPIDVDLKNVTFAYPSR
PGVTVLNGFSMRVKAGSTTAVVGASGSGKSTVVWLVQRFYDPVDGKVMVGSIDVRELDLK
WLRGECAMVGQEPALFTGSIRENIGFGNQKASWAEIEDAAKEANIHKFIAGLPNGYDTQV
GESGVQLSGGQKQRIAIARAIVKQSRILLLDEASSALDLESEKHVQEALRKVSRRATTIV
VAHRLSTVREADRIAVVDNGRVIEFGSHDDLLASHRDGLYAAMVKAEVEAQAFA
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagcacagcggcacctacaacaacgccatgtcccgtgaagtctccttttcgcgc
gacaaccacgacaagctctacgttccgccgcggcgggacgcgcctagctttggctacgac
gtcagcgtcgcgtcatacagccacagccagcgctacgacgacggcggtggctacggttac
gacgacgacgacgactgtgagatcgaggtgaggatcggaaagcctgtcagcatctccggg
ctgtttaagtactcgacaccgttagacatcctcctcctcgttctcgggtgtgttggtgcc
acaatcaacggtggctcacttccctggtactcgtatctgttcgggaatttcatcaacaag
gttgtcaacgccgataaggcacagatgatgacggatgtcaaacagatcagcttttacatg
gtgttccttgctgcagtagttgtgataggggcctatcttgagatcacgtgttggaggatc
attggcgagaggtcggcgctccgcatacgacgggagtacctaaaggcggtgctgaggcaa
gagattgggttcttcgacacggaggtcagcacgggcgaggtgatgcaaagcatctccagt
gatgtcgctcaaatccaggatgtcatgggagagaagatggcaggctttgtgcatcacgtc
ttcaccttcatcttcggttacgcggtcggcttcaccaaatcatggaagattgctcttgcg
gtcttcgctgtcacacctctcatgatgtcctgcggcatcgcctacaaggccatctatggc
ggcctcaccgccagggacgaggcatcataccaacgtgcaggcagcgtggcccagcaggcg
atcagctcgatccggactgtcctctcctttgtgatggaggaccggctggctgacaaatac
gctgagtggctgaacaaggcagcaccaatcggtataaagatgggcttcgccaagggcgca
ggtatgggcatgatctacctagtaacttactcccagtgggctctggcgttgtggtatggc
tcggagctggttgccaagggcgagatcaaaggtggcgacgccatcgcctgcttcttcggt
gtcatggtcggaggaagaaatgtttcttttgctgatgccttggaatctggcaacgttgtg
cgcaggggtttggcgttatcgctatcctactacgcccagttcgcgcaggggacggtggcg
gcagggcgagtcttcgagatcatcgaccgggtgccggagattgacgcatacgatagtggc
ggtcgcatgttgtcgacagtaagggggcggatcgagttcaaggacgtggagttcacgtac
ccgtcacggccggaggccatcatcttgtacaacctgaatcttaccatccccgcttccaag
atgctggcgcttgttggtgtcagcggagggggaaagtccactatgttcgcgctcatcgaa
aggttctacgacccgacgcgagggacgattatgttggacggccaggacctgccatcccta
aatcttaggtggctgcgctcgctggtcggcttggtcggacaggagcccatcctatttgcc
acctccatcatagagaacgtgatgatggggaaggagaacgcgacgaggcaagaggccatc
gcggcctgcaccaaggccaatgctcacaccttcatcctgggcctgccagatggctatgat
acacaggttggcgaccgtgggacccagctgtcaggcgggcagaagcagcggatcgcgctc
gcgcgtgcaatcatccgggacccgcgcatcctgctgctggatgagcccaccagcgccctg
gacgccgagtctgaggctctggtgcagaagtctattgaccacctttcagccggacgcacc
gtggtagtcattgcccatcgcctcgccaccgtccgcaatgctgacaccatcgccgtgctg
gaccgtggggccgtggttgagtctggccgccacgctgatctgatggctcggggcggtcca
tacgctgcccttgtgaagctcgcatcagacagtggcaggtccgacacctctgcagagccc
agcaaaccagctgccgccggcacggatatgcacaacagtttcaccgatgagtcagggtat
gagatgtccatgatgtccaagtcacggcaccgtgttcagacgatccacgaagaggcaagc
ccgaaggatgatgctagtgcaaagttcagtgtctcagaaatatggaagctgcagcggcgg
gaaggccccttgctgatcttgggttttctgatgggcataaatgctggagctgtgttctcg
gtgttcccgctacttctgggccaggccgtcgaggtgtacttcgatgccaacacgtcaaag
atgaagcggcaggtgggctatctggcggttgccgtggttggtctaggcgtggcttgcatc
ctgaccatgacagggcagcagggtctgtgcggatgggcgggtgctcggctcaccatgcgt
gtccgtgaccgcctcttccgcgccatcatgaagcaggagccagcgtggttcgatgaggaa
gacaacgccatgggtgtcctagtgacacggcttgcgcgggacgccatcgcgttccggtcc
atgttcggagacaggtacgccgtgctcttgatggctgtgggctcagccggtgtgggactc
ggcatatgtttcgcgctggactggcgattgacgcttgtcgccatgggctgcacgccgttg
acgcttggtgccagttatctcaacctgctcatcaacgtcggtccaaagtcggacgatggc
acgtacgcaagggccagcagcgttgccgctggcgccgtgtccaacgtgcgcacggtggct
gctctctgcgcccagggcaacatcgtccaatccttcaaccgggcactcgatgcccccatg
tccaaggcacggaggaggtcacagatcatgggcatcatcctcgggctgtcccaaggcgcc
atgtatggcgcctacacggtgacactttgggctggtgctctcttcataaagagagacgag
tccaaattcggtaacgtgtcaaagatcttcctcatccttgtgctaagttccttctctgtt
ggccaactggctggccttgcccccgacacatctggcgcaccagcggccatcgcgggcata
ctgtccatattgaagcgtcgcccaacgatcaacgaggatcctaccaagcggcgagcaatc
aaagatgggaggcccattgatgtggatctgaagaatgtgacgtttgcatacccatcgcgt
ccaggtgtgacagtgctgaatggattctcaatgcgtgtgaaggcagggagcaccactgca
gtggttggtgccagtggtagcgggaagtccacagtggtgtggttggtacaacgattctac
gacccggtggatgggaaagtgatggtaggcagtattgatgtacgggaactggacctcaag
tggcttcgaggggagtgtgcgatggtgggccaggagccggccttgttcactgggtccata
agagagaacattgggttcggcaaccaaaaagcttcttgggctgaaattgaagatgcagcc
aaggaggccaacatccataagttcattgctgggcttcccaatggctacgatactcaagtt
ggagagagtggggtccaattgtcagggggtcagaagcagaggatcgcaattgcacgagca
atcgtcaagcaatccaggatactacttctggacgaggctagcagcgcgttggatcttgaa
tccgaaaagcatgtgcaggaagcactcaggaaagtctcacgacgtgcaacgactatcgtg
gtagcacaccgcctctccactgttcgtgaagccgatcgcattgctgttgtggacaacgga
agggtcatcgagttcggaagccacgacgaccttctagcgagccatcgtgatggtttgtac
gccgccatggttaaggcagaagtggaagcgcaagcgttcgcctag
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