Panicum virgatum (switchgrass): 120643154
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Entry
120643154 CDS
T07260
Name
(RefSeq) farnesyl pyrophosphate synthase-like
KO
K00787
farnesyl diphosphate synthase [EC:
2.5.1.1
2.5.1.10
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00900
Terpenoid backbone biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
120643154
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pvir01006
]
120643154
Enzymes [BR:
pvir01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
120643154
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
120643154
Prenyltransferases [BR:
pvir01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
120643154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
120643154
NCBI-ProteinID:
XP_039775605
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All DBs
Position
7K:complement(50288968..50292858)
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AA seq
409 aa
AA seq
DB search
MSSRVMKAAACGGDQRGLDGELEEKLLLHDGGLARCSAGAAAALQQKRGIERRRLPPVPA
GPGGADDAGDYHERFVRAYDRLRDELLADDTCELTDEARRWVEQMIDYNVPGGKLNRGLS
VIDSYLLLKQGSEVTEDEFFLACVLGWCVEWFQACALLLDDIMDGSHTRRDQICWYRRPE
VGLRGINDGILLKCHIARLIKRYFREKTYYIDISELWNEVTLQTSLGQMLDLISTHNGAD
ELAKYNIEGYRRIVKYKTSYYSFYLPVACALLLSGAKLENFSELRDILIEMGVYFQAQDD
YLDCFVDPNTIGKIGTDIEDHKCSWLIVQALGHANINQIEVLLKNYGKKDSTSVSKVKST
YSTLDLKDMFSEFEDRAYKHLLTSIEAQHDLAVQEILKSFLKKIHRRKR
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctcgggtgatgaaggcggcggcgtgcggcggggatcagcgcggcctcgacggc
gagctcgaggagaagctcctcctgcacgacggcggcttggcgaggtgctccgcgggggca
gcggcggcgctgcagcagaagcgggggatcgagcggcgccggcttcctcctgttcctgct
ggtccgggcggcgctgacgacgccggcgactaccacgagaggttcgtccgggcgtacgac
cgcctccgggacgagctcctcgccgacgacacgtgcgagctcaccgacgaggccaggcgc
tgggtcgagcagatgattgattacaatgtaccaggagggaaactgaatcgaggtctatca
gtgattgatagttacctgctgttgaaacaaggaagtgaggttactgaagatgaatttttc
cttgcttgcgtccttggttggtgtgttgagtggtttcaagcatgtgcactgctgcttgat
gatatcatggatggttcacacacgaggagagatcaaatttgctggtaccgacgacccgag
gttggtcttcggggtataaacgatggtattctacttaaatgccacattgcacgtttgatc
aaaagatactttagagaaaaaacttactacattgatatctctgaattatggaacgaggtt
actctgcagacatctctaggacagatgcttgatcttattagcacacataatggcgcagat
gaacttgcaaaatacaatatagaaggataccgtcgtattgtcaagtacaagacatcttac
tactccttttacctccctgttgcttgtgcattgctgttatctggtgcaaagttggaaaac
ttcagtgagttaagggatatacttattgaaatgggtgtatattttcaagcacaggatgat
tacttggattgctttgtagatcctaataccataggcaagattgggactgacattgaggat
cacaagtgttcctggttgattgtacaagctctgggccatgccaatattaaccagatagaa
gtattgcttaaaaattatgggaagaaggattcaacctcggtttcaaaagtgaaaagtact
tactcgactcttgatttgaaggacatgttctccgagtttgaagatcgagcttacaagcac
ttgctcacatcaatcgaagctcagcatgacctcgcggtgcaggagatcctgaaatcgttt
ctgaagaaaatccaccgaagaaaaaggtaa
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