Panicum virgatum (switchgrass): 120643657
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Entry
120643657 CDS
T07260
Name
(RefSeq) autophagy-related protein 13b-like
KO
K08331
autophagy-related protein 13
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
120643657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120643657
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120643657
Membrane trafficking [BR:
pvir04131
]
Autophagy
Autophagosome formation proteins
ULK complex
120643657
Atg1 complex
120643657
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
120643657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
120643657
NCBI-ProteinID:
XP_039776022
LinkDB
All DBs
Position
8K:complement(4899051..4906087)
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AA seq
596 aa
AA seq
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MAAAAGASEPPMVEQVITEFFAKSLHIILESRSPYESSRNFTRPSPPSSPLSGSQPRDRW
FNLALRDCPAALENFDLWRQSNIEPLVIDIVLLQRDNTRTASAGPGRIIERWVIKYETSR
SVSSSGNGSKNGGKKSRSSSAQDHSLYRRAYSGSTVLFRSLYLVVRLLPAYHLFQELSSS
GRIRPLSLSHKILSFVEPFTRAEDAEMKHYAFAPIETLSGRLSLSVSYVPVLEVAAAPEP
TTPMATEIITDYVGSPTTDFLRKFNSLPSDGIVPASFTMSRRHSWSTEHGTGPSASPSRM
PTDNSPTAYSHQLNTSSSAKKRDAVNEECYPSPPLSPSPSHSPSSYPRNPFFRYESAPMS
ITTVRAGGGGSRLPPSPHRKDKQQCPFRNENLTRSPNDRSIIMKDLVRLGEVQNEKSLQK
VLSFGKDDLVYFRGLKLTRTSSKLFIMDELDERELVFAWEDKDTIIDQLSRMDLERENHE
SSQEAGGSITRSPDAAIGSLMRILKNAPGLRERLLTAPGAPVPREPSSLQRVMTEEHGRG
ASSSAVVPSALMRSRTAADALEELNRYKEIRESILNRGKGNPRDTKLEEKPADGDP
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggctgcgggcgcgtcggagccgccaatggtggagcaagtgatcaccgagttc
ttcgccaagagcctccacatcatcctggagtcgaggtcgccctacgagtcgtcgcgcaac
ttcacgcgcccttccccgccgtcgtcgccgctgtccggcagccagccgcgcgaccggtgg
ttcaacctcgccctccgggactgccctgctgcgctcgagaactttgacctgtggcggcag
agcaacatcgagcctctggtcattgacattgtcctcctgcagcgcgacaataccagaacc
gccagtgctgggcccggcaggatcatcgaaaggtgggtgataaagtatgaaactagcagg
tctgtcagcagcagtggtaatggtagcaagaacggtggcaagaagtctaggagcagctct
gctcaggatcatagcctgtacaggagggcatacagtggctcaacagtgttgttccggtcg
ctatatctggttgtcaggctcttgccagcataccatctcttccaggagctcagttcatcc
ggaagaatccgtccactcagcctctcacacaagattttgtcgtttgttgagccattcacc
cgcgcagaggatgcagagatgaaacactatgcatttgctccaattgaaactctgtctggt
cgcttgagcttgtcagtttcatatgtgccagtgctggaggtagcagcagcaccagagcca
accacaccgatggcaacagagattatcacggattacgttggaagccccacaacagatttt
ctgaggaagtttaattccctaccttcagatggcattgtacctgcatcttttaccatgagc
aggcggcacagttggagcacggaacatggaactggaccatctgcatcaccatcacgtatg
cccactgataattctccaacagcatattcacatcaacttaacacatcatcatctgcgaag
aagagagatgcagtaaatgaagagtgctatccatcgccacctctgtcgccatcaccatcc
cattcaccttctagctacccgagaaatcccttcttccgatatgagagtgctccaatgagt
attaccacagtgagggctggtggaggtggtagcaggctgcctccttctccacataggaag
gataagcaacagtgcccatttcgaaatgaaaatctaacacgttctcccaatgatagatca
ataataatgaaggatttggtcaggctgggtgaggttcagaatgagaagtctttgcaaaag
gttttatcttttggcaaagatgatttggtatattttcgtggactaaagttgactcggacc
tccagtaaacttttcatcatggatgaactggatgaacgagagttggtttttgcttgggaa
gataaagacaccatcatcgatcaacttagcaggatggatctcgagagagagaaccatgaa
tcgagtcaggaagctggaggctcgataaccaggtctccagatgcagcaataggtagtctc
atgcgcatccttaagaacgccccgggactcagggaaaggttactgacggcccctggtgcc
ccggttcctcgagaaccttcttcactccagagggtcatgactgaggaacatggcaggggt
gcatcaagctctgcagtggtgccttccgctctgatgaggtcaagaacggcagcggatgcg
ctggaggagctgaacagatacaaggagattagggaatcgatactgaatcgtggcaaaggg
aatccccgcgacaccaagcttgaggagaaacccgcagatggagatccttag
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