Panicum virgatum (switchgrass): 120643683
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Entry
120643683 CDS
T07260
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like isoform X1
KO
K07466
replication factor A1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03030
DNA replication
pvir03420
Nucleotide excision repair
pvir03430
Mismatch repair
pvir03440
Homologous recombination
pvir03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120643683
03420 Nucleotide excision repair
120643683
03430 Mismatch repair
120643683
03440 Homologous recombination
120643683
03460 Fanconi anemia pathway
120643683
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120643683
03032 DNA replication proteins [BR:
pvir03032
]
120643683
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120643683
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120643683
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120643683
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120643683
MMR (mismatch excision repair)
120643683
DSBR (double strand breaks repair)
HR (homologous recombination)
120643683
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
CDC24_OB3
DUF223
Motif
Other DBs
NCBI-GeneID:
120643683
NCBI-ProteinID:
XP_039776070
LinkDB
All DBs
Position
1K:complement(53218235..53221602)
Genome browser
AA seq
653 aa
AA seq
DB search
MAAARLTPNAVTATLAGDVNLKPVVQVVDLRSIAVTGPPGAGPRFRAIISDGVATTQALF
AAQLCDLARSGLVRRGAIVQLLDYIVNDVRGRRAMVILNMEVLVPECEIIGNPVLPPESG
VSISNSMRADQFNSAPGSTARSTLTTVTRSNENTPVIQRPMTGNPSNMIPRPSDNAQVFQ
PTVQPSYRPAPNYRNHGTIMKNDAPARIIPISALNPYQGRWAIKARVTAKGEIRRYHNTK
GDGKVFSFDLLDSDGGEIRATCFNALVDRFYEAVEIGKVYVVSRGSLKPAKKDYNHLNSE
WEIFLESQSTIELCPDENSSIPAMRFTFTSIDKIEDSENNAIVDVIGVVTSVNPSATIQR
KNGMETQKRTITLKDMSGRSVEVTMWGDFCNREGLQLQEMVERGAFPVLAVKAGRVNDYS
GKSVGTISSSQLLINSDLAEAHNLRQWFDCGGRDASSQSISRDFTPAASRNEIRKTVAQI
KDDGLGMGDKPDWVTVKATVVFFKTDSFCYTACPNVIGDRQCSKKVTKSDSGNWLCDKCN
QEFTECDYRYLLQLQIQDHTGTAWATAFQEPGEELLGCSARELYMFKENEDPRYTDVLLQ
GLYRQYLLRLKVKEETYGDERRVKNTVFKVERIDPSAESKFLLDHISRLTGSY
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgaggctgacccccaacgccgtgacggcgacgctggcgggggacgtcaac
ctcaagccggtggtgcaggtcgtcgacctccggagcatcgcggtcaccggccccccgggt
gccgggcccaggttccgcgccatcatctccgacggcgtcgccacgacgcaggcactgttc
gccgcgcagctctgcgacctcgcgcgctccggcctcgtccgccgcggtgcgatcgtgcag
ctcctcgactacatcgtcaacgacgtccgtggcaggagggctatggtcattcttaacatg
gaagttcttgttccagagtgtgagattattggaaatccagtattgcctcctgagtctggg
gtttctatttcaaattccatgagagcagaccagtttaatagcgcgcctggttcaacagca
aggagtactttgaccacagtaacaaggtccaatgaaaatactccagtaatccagcgaccg
atgacagggaacccttcgaacatgatccctaggccaagtgacaatgcacaggtcttccaa
ccaacagtacagccatcatatcgccctgcacccaattacagaaaccacggcacaatcatg
aaaaacgatgctcccgctagaataatccccatatctgcactaaatccttatcagggccgc
tgggctatcaaggctcgagttactgccaagggagagatccgccggtatcataatacaaaa
ggtgacggcaaagtgttctcttttgacctgcttgattctgatggtggtgagatacgggct
acatgtttcaatgctcttgttgatcgcttctatgaagctgtggaaattggtaaggtctat
gtggtatcaagaggaagcttgaaacctgcaaaaaaggactacaaccatctgaatagtgag
tgggaaattttcttggaatctcagtcaaccattgaactttgtcctgatgagaacagctcc
attcctgccatgcggtttaccttcacatcgattgataaaattgaagattcagagaacaat
gctattgttgatgtcattggtgtcgttacatctgtcaaccctagtgccacaatacagagg
aaaaatggcatggaaactcagaaaaggaccattaccctgaaggatatgtctggtcgaagt
gttgaggttaccatgtggggtgacttctgcaacagagaaggcttgcagctgcaagaaatg
gtcgaacgtggggcctttcctgtgctggctgttaaggctggaagagtgaatgattacagt
ggtaagtctgttggcacaatttcttcatctcaactcctcataaactctgatcttgctgaa
gctcataaccttaggcagtggtttgattgtggaggaagagatgcttctagtcagtccata
tccagggatttcactccagcagcatcaaggaatgagatccgaaagacagtagcacagata
aaggatgatggtcttggaatgggggacaaacctgattgggtcacagtgaaggctactgtt
gtatttttcaagaccgactccttctgctacacagcttgccccaacgtgattggagacagg
caatgcagtaagaaggtgacaaagtctgactcaggcaactggctctgtgacaagtgcaac
caagagtttacagagtgtgattacaggtacctcctacagttacagatccaagatcacacg
ggaacagcttgggcaacagcattccaagagcctggggaggagctactcggttgctcggcg
cgagaactctacatgttcaaagagaacgaggatccacgctacacagatgttttgctccaa
ggcttgtaccggcagtatctgctgaggctgaaagtgaaagaagaaacatacggagacgag
agacgagtgaagaacactgtgttcaaggtggagaggattgatccttcggctgagagtaaa
tttctgcttgatcacatttcaaggttgacaggatcatattaa
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