Panicum virgatum (switchgrass): 120643806
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Entry
120643806 CDS
T07260
Name
(RefSeq) cleavage stimulating factor 64-like
KO
K14407
cleavage stimulation factor subunit 2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120643806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120643806
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
120643806
U7-dependent histone pre-mRNA processing factors
120643806
SSDB
Ortholog
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GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
partial_CstF
RRM_7
RRM_10
SKA1
Motif
Other DBs
NCBI-GeneID:
120643806
NCBI-ProteinID:
XP_039776211
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All DBs
Position
8K:7947022..7952462
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AA seq
473 aa
AA seq
DB search
MAAAPPGAQNRCVFVGNIPYDATEEQLVQICEEVGPVVSFRLVIDKETGKPKGYGFCEYK
DEETALSARRNLQGYEINGRQLRVDFAENGRNTDRNREKGRGGPGMASGAESQKQLAGTS
VVGDTSLHQPVGLPPAIHAASVMAGVLGGAQTAIVQNGLPVQYGLGNDPLTHYLARMSRH
QLHEIMAELKALTTQNKELSKKLLQGIPQLPKALFQAQIMLGMVTPQMMQMAKNQQPSSS
LAQSSSHINEPSPANMPPNPTALQEQTATLHNFPQYQHASQPPVKNFPHGHQSGLATHPP
MLSQPLGVSSIPTQPLVASVGLMSQVQHPFMPQHPRPPVMQTSVQSVPSTHPHSQVAAVP
ETLPNEIAEYAHPSKLRKLEDGTSVLGMVNSSHTAYAAPPQAVGPSGPSGSYSAGAASFQ
RPGNEAQLTPDVESALLQQVLQLTPEQLSSLPPEQQQQVIELQKMLALVNSTN
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcgcccccgggcgcccagaaccgctgcgtcttcgttggtaacataccgtac
gatgcgacggaggagcagctcgtgcagatttgcgaggaggtcggcccggtcgtctccttc
agattggttattgacaaggaaactggaaagccgaagggttatggcttttgcgagtacaag
gatgaggagaccgctctaagtgcccgccggaacctgcagggttatgagattaatggtcgt
cagttgcgtgttgattttgctgaaaatgggaggaatactgacagaaatagagaaaagggt
cgcggaggaccagggatggcatctggtgctgagagtcaaaaacagttagctgggacttct
gttgttggagatacaagtcttcatcagcctgttggtctcccaccggcaatacacgctgcg
tctgtgatggctggcgtccttggtggagctcaaactgcaattgttcaaaacggtttacct
gtccagtatggacttggaaacgacccccttactcattatttggccagaatgtcaaggcat
cagttgcatgaaatcatggctgaattgaaggccctaactactcaaaataaggagctttcc
aaaaaattactacaaggaattccacagctgccaaaggccctatttcaggcacaaataatg
ctcggaatggtgactccacagatgatgcagatggcaaagaaccaacaaccctcgagctcc
ttggctcaatcttcatctcacatcaatgagccatctccagctaacatgccaccaaaccca
actgccctgcaggaacaaacagctacactacataattttcctcagtatcagcatgcatct
cagcctccagtcaaaaattttccacatggacatcagtctggattggccacacatcctcca
atgctatctcagcccctaggggtttccagtattcctactcaacctcttgtggcctcagta
ggcttaatgtcgcaagttcagcacccatttatgccacagcaccctagaccacctgttatg
caaacaagtgtacagtcagtaccttcgacccaccctcattcgcaggtagctgctgtacca
gagacactaccgaatgaaatagcggagtatgcccatccttcaaagttgagaaaattggag
gatggaacctcagtacttggaatggtaaacagcagccatactgcttatgcagctccacct
caagcagtgggccctagtggaccatctgggagctatagtgctggtgctgctagctttcag
cgaccagggaatgaagcgcagctcacacctgatgtggaatcagctcttctgcagcaagta
ttgcagttgacaccggagcagctgagttcattgccaccagagcagcagcagcaggtgatt
gaactccagaaaatgcttgcactggtaaatagtaccaattga
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