Panicum virgatum (switchgrass): 120643807
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Entry
120643807 CDS
T07260
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120643807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120643807
03041 Spliceosome [BR:
pvir03041
]
120643807
03009 Ribosome biogenesis [BR:
pvir03009
]
120643807
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120643807
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120643807
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120643807
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120643807
Complex C
U4/U6.U5 tri-SnRNP related factors
120643807
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Helicases
120643807
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120643807
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
120643807
NCBI-ProteinID:
XP_039776212
LinkDB
All DBs
Position
8K:complement(7952744..7959755)
Genome browser
AA seq
1004 aa
AA seq
DB search
MGEEAENASKRKAPESSAVEEPSLPAPGSTAEADPAAKRRSLSRSCIHEVAVPKGYAAAK
DEAVHGTLASPEFNGEMAKEYPFKLDPFQSVSIACLERNESVLVSAHTSAGKTVVAEYAI
AMAFRDKQRVIYTSPLKALSNQKYRELSQEFTDVGLMTGDVTLQPNATCLVMTTEILRAM
LYRGSEVIKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEW
ICSLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFGKLQDSFSKQNN
QLDGRKGGGPKASGRIAKGGSASGNSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAMSM
SKLDFNTEDEKECIEQVFRNAISCLVEEDRSLPAIELMLPLLKRGIAVHHSGLLPIIKEL
VELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYIGSGEYIQMSGRAGR
RGKDERGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYTILNLMSRVEGQFTAEHV
IRNSFHQFQYEKALPEIVQKITRLENEATLLDSSGETDLAEYHKLGLDISELEKKIMSEM
IRPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPPASGTLPPALSAARGNSYIVDTL
LHCSSISNENGSRSKPCPPRSGEKGEMHVVPVPLPLLSGLSSVRINIAPDLRPPEARQNI
LFAVQELGKRYPQGLPKLHPINDMGIQEPELVDLVHKLEELEQKLCSHRLHKSGQSEQEL
SWYQRKADLNSEIQNLKSKMRDSQIQKFRDELRNRSRVLKMLGHIDADGVLQLKGRAACL
IDTGDELLITELMFNGTFNDLDHHQVASLASCFVPCDKSSEQIRLRNELSRPMMQLQEAA
RKIAEVQRECKLEVNVEEYVESTCRPYLMDVIYCWSRGATFAEVMEMTDIFEGSVIRLAR
RLDEFLNQLRAAAEAVGEVNLEKKFEKASESLRRGIMFSNSLYL
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgggggaagaggcggagaacgccagcaagcgcaaggcgccggagtcgagcgcggtggag
gagccgagcctgccggcgccggggtcgacggcggaggcggacccggcggccaagcgccgg
agcctctcgcggtcgtgcatccacgaggtcgccgtcccgaaggggtacgcggcggccaag
gacgaggcggtgcacgggacgctggcgagcccggagttcaacggggagatggccaaggag
tacccgttcaagctcgaccccttccagagcgtctccatcgcgtgcctggagcggaacgag
tcggtgctcgtctcggcgcacacctccgcggggaagacggtcgtcgccgagtacgccatc
gccatggcgttccgggacaagcagcgggtcatctacacctccccgctcaaggccctcagc
aaccagaagtacagggagctcagccaggagttcaccgacgtcgggctcatgacgggcgac
gtcacgctccagcccaacgccacgtgcctcgtcatgacgactgagatcctcagggccatg
ctctacaggggctccgaggtgatcaaggaggttgcctgggttatattcgacgagattcat
tacatgaaggatcgtgagaggggagtcgtgtgggaggagagtataattttcctgccccct
gccatcaagatggtctttctttccgctaccatgtcaaatgcgactgagtttgccgagtgg
atatgcagtctgcacaagcagccctgccacgttgtgtatacggatttcaggccgacacca
ttgcagcactatgtgtttccaataggcggttctggtctctaccttgtggtagatgaaaat
ggccagttcagagaggataactttgggaagctacaggactcgtttagtaagcaaaataat
caactagatggaaggaaaggtggtggacctaaagcgagtggtcgaattgcaaaaggtgga
agtgcctctgggaattctgacatatatagaatcgtcaagatgattatggagcgcaagttt
caaccagtcataattttcagctttagtagaagagaatgtgagcaccatgccatgtctatg
tcaaaacttgacttcaacactgaagatgaaaaggaatgcatcgagcaagttttccgtaat
gctattagctgtttagtcgaggaagatagaagtttacctgctatagagttgatgttgccg
cttcttaaacgaggcattgcagtacaccattctggactacttccaataatcaaggagttg
gtggaactgctctttcaagaaggtcttgtgaaagctctctttgctactgagacatttgcc
atgggtcttaatatgcctgcaaaaacagttgttttcacatctgtcaaaaaatgggatggt
gatactaaccgctatattggttctggagaatatatacagatgagcggaagagctggccga
cgtggcaaggatgaacgaggcatttgtgttataatgatagatgagaagatggaaatgagt
gttatcaaggacatggtgttaggcaaaccagcacctcttgtcagtactttccgactgagc
tattacactattctgaacttaatgagccgtgtggagggccaatttaccgctgagcatgtg
attagaaattcattccatcagtttcagtatgagaaggcattgccagaaatagttcagaag
attacgcggttggagaatgaagctaccttgctcgattcttctggggagactgatcttgct
gaatatcacaaattgggccttgatatatctgaacttgagaagaaaatcatgtctgagatg
attagaccagagagggctttgttgtatttggttcctggaaggctggtcaaagtgagggat
ggttcaacagactggggatggggtgtggttgtaaatgtagtgaagaaacctccagcatct
ggtactcttccccctgctctaagtgcagcacgtggtaatagctatatagtggataccttg
cttcactgctcttctatttccaatgagaatggatcacgttcaaagccatgcccgcctcgc
tctggcgagaagggtgaaatgcatgtggtgcctgtaccattacctttactatctggtcta
agcagtgttagaatcaacattgctccggatctacgaccacctgaagcaagacaaaatata
ctttttgcagtgcaagaactaggaaagcgctaccctcaaggcctaccaaagctacatcca
atcaatgacatgggtattcaagaacctgagctagtagacttggttcataaactcgaggag
cttgagcagaaattatgttctcaccgacttcataagtctggtcaaagtgagcaggaatta
tcatggtaccaaagaaaagcagatttgaatagtgaaattcagaatttgaagtcaaagatg
cgggattcacagatacaaaaatttagagacgaacttaggaaccggtcacgcgttctgaag
atgctcggtcatattgatgctgatggtgttctccagctaaagggacgtgctgcctgttta
atagacacaggggatgagctgcttatcactgagcttatgttcaatggtacatttaatgat
ctcgatcatcatcaagttgcttcccttgctagctgctttgtaccttgtgataaatcaagt
gagcaaatacgcctgagaaatgaactttccaggccaatgatgcaacttcaggaggctgcg
agaaaaatagctgaggtacaacgagaatgcaaactggaagtaaatgtggaggaatatgtt
gaatcaacctgcagaccgtacctgatggatgtcatatactgctggtcaaggggagcaacc
tttgctgaggtgatggaaatgaccgatatttttgaaggaagtgtcataaggcttgctaga
aggctggatgaatttctgaatcagttgagagccgctgcagaagccgtcggggaggttaac
ctcgagaagaagtttgagaaggcgagtgagagcttgcgtcggggtatcatgttttccaat
tcattgtatctgtaa
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