Panicum virgatum (switchgrass): 120643810
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Entry
120643810 CDS
T07260
Name
(RefSeq) protein OPAQUE1-like isoform X1
KO
K10357
myosin V
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
120643810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120643810
04131 Membrane trafficking [BR:
pvir04131
]
120643810
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120643810
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pvir04812
]
120643810
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
120643810
mRNA cycle factors
P-body specific factors
120643810
Membrane trafficking [BR:
pvir04131
]
Others
Actin-binding proteins
Myosins
120643810
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
120643810
Cytoskeleton proteins [BR:
pvir04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
120643810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
AAA_16
AAA_10
Zeta_toxin
Flp1_like
AAA_22
ABC_tran
Motif
Other DBs
NCBI-GeneID:
120643810
NCBI-ProteinID:
XP_039776219
LinkDB
All DBs
Position
1K:53288979..53316885
Genome browser
AA seq
1522 aa
AA seq
DB search
MSYRKGTKVWVEEKGEGWVEAEVTEAKERAVLVLTSQRKKITVSPEKLLPRDTDEDLGGG
HVDDMTKLTYLNEPGVLYNLKKRYALNEIYTYTGSILIAVNPFTRLPHLYNEYMMEQYKG
VRLGELSPHVFAVADASYRAMVNESRSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAL
DDRTVEQQVLESNPLLEAFGNAKTVRNDNSSRFGKFVEIQFDASGRISGAAIRTYLLERS
RVVQITDPERNFHCFYQLCASGKDAELYKLGHASSFHYLNQSKSYVLEGTNNKDEYWKTK
RAMDIVGISRKDQDAIFRTLAAILHLGNIEFAPGKDSDSSKIKDSTSNFHLQTAANLFMC
DADLLVSTLCSRSINTREGIIIKALDCSAAAANRDALAKTVYARLFDWLVENINKSIGQD
VDSKVQIGVLDIYGFESFKNNSFEQFCINFANEKLQQHFNEHVFKMEQEEYKSEEINWSY
IEFIDNQDVLDLIEKKPIGIIALLDEACMFPKSTHETFATKMFRNFSCHPRLERTKFSET
DFTISHYAGKVTYQTDSFLEKNRDYIVAEHCNLLSSSRCPFVSGLFTSLPEESIRSSYKF
SSVASRFKLQLHALMETLNSTEPHYVRCVKPNSANRPQLFENQSVLHQLRCGGVLEAVRI
SLAGYPTRRTYAEFVDRFAVLVPELMIGSYDERTLTKGILEKMKLDNFQLGRTKVFLRAG
QIAILDLRRAEVLGNAARHIQGRFRTFVARKEFVKTREASISVQAYCRGCLARKMYAIRR
ETAAAVIVQKYVRRWLLRRAHQQACLAALLIQSYVRGFITRRYFSAIREHKAATVIQSAW
RRRKVVMLFQHYRKATVAIQCAWRQKLARRELRRLKMAANEAGALREAKNKLEKKMDDLA
LRLTLERRLRAAVEESKSSEILKRDKTIESLSAECAAAKSAAQIEHDKNLLLQRQLDDSL
REITMLQSKRIMTAEAEKENSNLKNLVESLSVKNSVLEKELNVARKSSDDTMEKLKDVEG
KCNHLQQNLDKLQEKLTNLENENHVLRQKAFNTPAMNNLAVAPKTLSEKFAASTGLSNCE
SKSTFESPTPTKYLAPLPQTLTGSRRSRLPVERHEENHEILLRCIKENLGFKDGKPVAAC
IIYKCLLHWRAFESERTAIFDHVIEAINDVLKGQEADGRLPYWLSNTSALLCLLQRNLRS
NGLFATPSRRSGALGLGGKLVQSLRSPSKLVGHSDSLPQVDARYPAILFKQQLTACVEKI
FGQLRDNLKKEISPLLNVCIQAPKSTRGQPGKASKSPGVGAQPALNSNWDNIVNFLDLLM
DTLRENYVPSFFIRKLITQLFSFINIQLFNSLLLRRECCTFSNGEYVKAGLSLLEKWITD
VTEEFAGTSWHELNYIRQAVGFLVIHQKRKKTLEEIRQDLCPSLSVRQIYRICSMYWDDK
YNTQGISNEVVAAMREMVNKDTQNLVSNSFLLDDDLSIPFSTEDLSMAIPAMDYADVDLP
ESLQHYTSVQFLLRQQDPQPVQ
NT seq
4569 nt
NT seq
+upstream
nt +downstream
nt
atgagctaccgcaaggggacgaaggtgtgggtggaggagaagggggaggggtgggtggag
gcggaggtgacggaggcgaaggagcgcgctgtcctcgtgctcacgagccagcggaagaag
attacagtttcgcccgagaaattattgcccagggatacagatgaagatctgggtgggggt
catgttgatgacatgaccaaactgacgtatctgaatgaaccaggtgttctttacaatctg
aagaaaagatatgcattgaatgagatttatacgtacaccggaagcatcttgattgctgtt
aatcctttcacgaggctacctcacctgtacaacgagtacatgatggagcaatataagggt
gtccgattgggggagttgagtccgcatgtttttgcagtagctgatgcatcgtacagggct
atggtgaatgaatcccgaagccagtccatcctggttagtggtgaaagtggtgctggcaaa
accgaaacgactaagcttattatgcagtatctcacctttgttggtggtagagctgctctt
gatgatcgaacagtggaacaacaggtcctagaatccaaccctcttttagaggcatttggc
aacgcgaaaacagtacggaatgacaactcaagccgatttggaaaattcgtggagatacag
tttgatgcaagtggtaggatatctggagcagctattaggacctatcttttggaaaggtcc
cgtgttgtgcaaattactgatcctgaaaggaattttcattgcttctaccagttgtgtgct
tctgggaaggatgcagagctgtacaagcttgggcatgcaagtagttttcattacttgaac
caaagcaagagttatgttttggaagggacaaacaacaaagacgagtactggaagacgaaa
agagcaatggacattgttgggattagcagaaaagatcaggatgctatatttcggacattg
gcagccattcttcatcttggcaatattgagtttgctccaggaaaagattctgattcctca
aaaattaaggattcaacttcaaattttcacctccaaacggcagctaacttatttatgtgt
gacgcagatctattggtttcaacattatgtagtcggtctataaatactcgtgaaggaata
attattaaagcattagactgttctgcggctgcagctaatcgtgatgctctagcgaagact
gtatatgccagattatttgactggcttgtcgagaatattaataagtcaattggtcaagat
gttgattccaaggtacaaattggtgtcttggatatctacggctttgaaagcttcaaaaac
aatagctttgagcagttctgcattaactttgcaaatgaaaaactacagcaacactttaat
gagcatgtattcaagatggaacaggaggagtacaaaagtgaggaaattaattggagctac
attgagttcattgacaatcaggatgtgctggatttgattgaaaagaaaccgattggaatt
attgcactgctggatgaagcttgcatgtttccaaaatctactcatgagaccttcgcaaca
aagatgttcagaaacttctcttgccatcctaggcttgagaggacaaaattctcagaaaca
gattttaccatctcacactatgctgggaaggttacatatcaaacggattcttttctggaa
aagaatcgagattatattgttgcagagcactgcaatcttctatcatcttcaaggtgccca
tttgtttctggacttttcacttcgttgccagaagaatctataagatcctcctacaagttt
tcgtcagttgcttccagatttaagctacaactacatgccctcatggaaactctaaactca
acggaacctcactatgtacgttgtgtgaagcctaactctgccaatcgacctcagcttttt
gaaaatcaaagcgtcttgcatcaactgcgttgtggaggtgtcttagaggctgtccgtatt
agtcttgctggctatcctaccagaaggacttacgctgaatttgttgatcggtttgctgtt
ctagttccagagttgatgattggaagttatgacgaaagaacgctgacaaagggaattctc
gaaaagatgaagcttgataattttcaacttggtagaacaaaggtattccttagggctggt
caaattgccatattagatctgcgtcgtgctgaggttttgggcaatgctgcgcgacatatt
caaggccgtttcagaacatttgtcgcacgcaaagaattcgtgaaaacaagggaggcatca
atttctgtacaagcatattgcagaggctgtttggcaaggaagatgtatgcgatcagacga
gaaacagctgcagctgtaattgttcagaagtatgtccgaagatggctgctacgccgagct
caccagcaagcgtgtttggctgctttgcttattcagtcttatgttcgagggtttatcact
cgccgctatttctcagccattagggagcataaggctgctacagtgatacagtctgcatgg
agaaggcggaaggttgtaatgcttttccagcattacaggaaagccactgtggcaattcag
tgtgcttggagacaaaagcttgcaagaagggagctacggagacttaaaatggctgcaaat
gaagctggtgcattgcgtgaggcaaagaataagcttgagaaaaagatggacgatcttgct
ttaagacttactcttgaacggagactgcgggctgccgttgaagagtcaaagtcatcagaa
atattgaagcgtgacaaaacaattgaatcattaagcgcagaatgtgctgctgctaagtca
gctgctcaaattgaacatgacaaaaatttgttgctccagaggcagctggatgattctttg
agagagatcaccatgttgcagagtaaaagaattatgaccgcagaagcagaaaaagaaaac
tccaacctaaagaatttagtcgaatcattatctgtgaaaaattcagtactggagaaagaa
cttaatgtggctcgtaaaagtagcgatgatacaatggaaaaattgaaggatgtggaggga
aaatgcaaccatctacagcaaaatttggacaaattgcaggagaaactcactaatttggaa
aacgaaaatcatgtcctaagacagaaggcatttaatacaccagcaatgaacaatctagct
gtagctccaaagacgttatctgagaaatttgctgcatcaaccgggctttccaattgtgag
tcgaagagtacatttgaaagcccaacaccaacaaaatatctggctcctcttccgcagact
ttgactggatcgcgaagatcaaggttgcctgttgaaaggcatgaggaaaatcatgaaatt
ttgttaagatgcatcaaagaaaatttaggctttaaagatggcaaaccagttgcagcctgt
atcatttacaaatgccttctacactggcgtgcttttgaatcagagaggactgctattttt
gatcatgtaattgaggccataaatgatgtcctaaaggggcaggaagctgatgggagatta
ccttattggttgtccaatacttctgcattgctatgccttctgcagaggaatctgcggtca
aatggattatttgctacaccatctcgtcggtctggagctctagggctaggcgggaagcta
gtgcaatcgctgaggtctccttcaaagcttgtaggccacagtgattctctgccacaagtg
gatgcgcgatatccagccatactattcaaacagcagcttactgcatgtgtcgaaaagatc
ttcgggcagctcagagataatctgaaaaaggaaatatcacctcttcttaatgtttgcatc
caggctccgaaatcaacacgtgggcaacccggaaaagcatccaagtcacctggggttggt
gcccaaccggcattaaattctaactgggacaacattgtcaatttccttgacttacttatg
gatacattgcgagaaaattatgtgccatccttctttattcgtaaacttatcacacaatta
ttctccttcatcaatatacagttgtttaacagtcttcttctccggcgtgaatgttgtaca
ttctccaatggggaatacgtgaaagctgggctatccttgttggagaaatggattactgat
gtcacagaggagtttgcggggacatcttggcatgagctaaattatatcagacaagctgtt
ggttttttggttatacatcaaaaaagaaaaaagacacttgaggagatcaggcaagatctt
tgcccgtccttgagtgttcgccaaatctacaggatatgctcgatgtactgggatgacaaa
tacaatacccaaggcatatcaaacgaggtggttgctgcaatgcgggagatggtcaacaag
gatacccagaatcttgtgtcaaattcttttttgttggatgatgacttaagtataccattc
tcgaccgaggatctgtccatggctatcccggcaatggattatgctgacgtcgatcttcca
gaatctcttcagcactatacatcagtacagtttctactcagacagcaggacccacagcct
gtccaatag
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integrated database retrieval system
