Panicum virgatum (switchgrass): 120643843
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Entry
120643843 CDS
T07260
Name
(RefSeq) SWI/SNF complex subunit SWI3C-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120643843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120643843
03036 Chromosome and associated proteins [BR:
pvir03036
]
120643843
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120643843
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120643843
PBAF complex
120643843
GBAF(ncBAF) complex
120643843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Motif
Other DBs
NCBI-GeneID:
120643843
NCBI-ProteinID:
XP_039776256
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All DBs
Position
8K:8942336..8948328
Genome browser
AA seq
781 aa
AA seq
DB search
MPRKISSTSDSRRKRKRNPNASPSRPSTSAAAAEHSDKSDSAAANGDDDAAAHAAAGGGA
DDNEGPAASEDPVLDLREAEVLPSAEAISAFPAAKRRVVNRPHPSVLALIAAERSAYSGD
TSATAPAPALENISHGQLQVLSGVLPDHPSLATDPDKPSLYVCTPPPLMEGRGVPKQFHG
RLHVVPKHSDWFSPGAVHRLERQVVPHFFTGKSPGHTPEKYVMLRNKVIAKYLENPGKRL
AFAECQGLVGSTGELYDLSRIVRFLDTWGIINYLAAGSVHRGLRMAASLLREEPSGELQL
VTAPLKSIDGLVLFDRPKCSIQAEDISSMASSSLNSEVVDFDAAFAELDGKIRERLSESS
CSYCLQPLPSLHYRSQKEADIALCSYCFHDARYITGHSSIDFQKVDGDNDGLENDSDKWT
DEETLLLLEGIEKYNDNWDDIAGHVGTKSKAQCIYHFIRLPVEDGLLENVKVPNGSVPQS
NGYQHSDSNGSTSGIPVQSFQPGNELPFINSSNPVMSLVAFLASAIGPRVAASCAHAALS
FLTRDDDPRLSSEGMHADGRGNGANPNFPNHSGATPAVSPENVKHAAMYGLSAAAMKSKL
FADQEEREVQRLAATVINHQLKRLELKLKQFAEVETLLLKECEQVERVRQRISADRARMR
SALLGSTGMPGSSSTMPSNPASMSPRPVGVPGSMPQTSMPAAAAYANNMQGHGQAQMPQM
PFMHQRPQMLSFGPRLPLSAIQTQPSPQASNIMFNSGMPSSVASNHHQLLRSSSGNNFSA
G
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgccgcggaagatctcgtcgacatcagattcgcgccgcaagcggaagcgcaaccccaac
gcgtccccgtccaggccctccacctccgccgcagcggccgaacactccgacaagtccgac
tccgccgccgcgaacggcgacgacgatgccgccgcccacgccgccgcggggggcggggcc
gacgacaacgagggccccgcggcgtccgaggaccccgtgctcgacctccgcgaggcggag
gtgctgccctcggccgaggccatctccgccttccccgccgccaagcgccgcgtggtcaac
cggccgcacccgtccgtcctcgccctgatcgcggcggagcgatctgcttattccggcgac
acctctgctacagcaccggcgccggcgctagagaacatctcgcacgggcagctgcaggtg
ctctctggggtgctgccggaccacccttcccttgccacagaccccgacaaaccgtccctg
tatgtgtgcaccccgccgcccctaatggaggggcggggcgtgcccaaacagttccatggt
cgcctccatgtcgtgccaaagcactcagattggttctcccccggggcagtgcataggctt
gaaagacaggtggttccgcacttctttacagggaagtctccagggcacaccccggagaag
tatgtcatgctaaggaataaagttattgccaaatacttggagaacccaggcaagaggctt
gcttttgctgagtgccaggggcttgttgggagcacaggcgaactgtatgatttgagtagg
attgttaggttcttggacacttgggggatcattaattaccttgcggctggatcagtgcac
cgcggcctgaggatggcagcgtctcttctaagggaggaaccatcaggggaattgcaattg
gttacagcaccattgaaatcaatcgatggtctggttttgtttgatcggccaaaatgtagc
atccaagcggaggacatttcttcgatggcatcatcctctttgaattcggaggtggtggat
tttgatgctgcatttgcagaactggatgggaagattagggagcgtttgtctgaaagctct
tgcagttactgcttacagcctttgccaagtttgcattaccgatcgcagaaggaggcagat
attgctctgtgctcttattgcttccatgatgcgagatatattactgggcattctagcata
gatttccagaaagtggatggggataatgatggattggaaaatgatagtgataaatggact
gatgaagaaacattgttgctgttggagggcattgaaaagtacaatgacaactgggatgac
attgcagggcatgttggaacaaaatcaaaggcgcaatgtatttaccattttattcggctt
ccagtagaagatggtttgctagagaatgttaaggtaccaaatggatccgtaccacaaagc
aatggttatcaacattcagattccaatggcagcacttcagggataccagttcaaagtttt
caacctggaaacgagcttccattcattaattcttctaatccagtcatgtcgctggttgca
tttttggcttctgcaataggaccaagagttgcggcatcatgcgcgcatgcagcattatcc
tttttgacaagagatgatgatcccaggctcagttctgaaggaatgcatgctgatggcagg
ggcaacggtgcaaatcctaattttcccaaccatagtggtgcaacaccagccgtttctcct
gaaaatgtgaaacatgccgccatgtatggtctatcagcagcagcgatgaagtctaaactc
tttgcggaccaagaggaacgtgaagtccaaagactagctgctaccgtaataaatcatcag
ttaaagaggttggagttgaaattgaagcagtttgcagaagttgagactttgctcttgaag
gaatgtgagcaagtggagagggtgagacagcggatttcagctgaccgtgcccggatgagg
tcagccctgttaggttccactggaatgcctggaagcagtagtaccatgccatccaatcca
gcaagcatgagccccagaccagtgggtgtgccgggctccatgcctcagaccagcatgcca
gctgcagctgcatatgccaataacatgcagggacatggtcaagcccagatgcctcagatg
ccgttcatgcatcagcggccgcagatgctttcgttcggtcctcgccttccactctcggca
atccagactcaaccatcaccacaggcatcgaacatcatgttcaactctgggatgcccagt
tcggttgcatctaaccaccatcagttgctgagatcgtcttctggaaacaattttagtgca
ggatag
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