Panicum virgatum (switchgrass): 120643853
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Entry
120643853 CDS
T07260
Name
(RefSeq) DNA topoisomerase 2-binding protein 1-A-like isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120643853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120643853
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120643853
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
120643853
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
120643853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
RTT107_BRCT_5
TopBP1_BRCT0
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
120643853
NCBI-ProteinID:
XP_039776268
LinkDB
All DBs
Position
8K:complement(9360469..9370000)
Genome browser
AA seq
966 aa
AA seq
DB search
MTPSYSSGPAGHAGGRRAATFAGASVFLSRNLVAPEVFDAVHDALRLNGAEVLLCADPSR
TGPLDFHVISSSSHERFADLRTKGCNLLGPQCILSCAKERRFLPKQSYTCCLAMDGVKIL
CSGFEKAEKAKIEELVTAMGGILESKSSMDVNFVIVKDVMAAKYKYAVNNLKPVVTMNWL
EQCWIEHRVVPHEPYRILPFVGLNICVTKLNPVERKELEKTIVRNGGQFSGCLTRKCTHL
VANEPGGDKYVVARRWGNIHIVNPRWVEQSVARRACLDENSYLVCQTWSASSGLKTSLKE
QHNPEISSASASFQPVPATSIDDSVSTSQCVPASFGDSSKISNTDIVGAPGVQEANEMQV
DSHVAEDTEAENDDLYLSNCRISLVGFEENELLRLLRMIRNGGGSRHILLNEKLTHIILG
APSEYEKKEVRRLAAWGVINVVKVTWLEDCNREKKEVKVSPTHVATELLLKEFSHVTMEK
SSGTRETKVAKSSSGIFHVPTVNDSHGNQLEKDMSSERKPARGKHENSMNKTRSATRSAN
SSQQNAVVNISKHDPKSQGASTVNSGNSRSNVFKGITFGFSNSFSHDKRPEVIDWIREGG
GIVVGDIQSKTVNYTIECHGRNSMPCDFSHSTVVSTHWIRSCLEVACLQEVGSHPIFSPL
RCRIPLPGFEKFRFCISLSQYEKKESYLLKNLCFALGAKFTEKAFKGVTHLICKFASGDK
YEVYSKRGTPTITEEWLFECVKQDTIVSFDHFQPKPLTSQDKEADLCTVSQYSTQASRFN
CSELLSGYQVTTTNPTDNLAGDASANEEAIAPAVSKRRLLSVSGHANDTCGNIGRTEKHL
ETGSVPDVADAIEVLSSKIQDVQSPSSIFEPDNSAVVQDQKDTHSFGISRSWLNMQQKQE
NTPGTKVQSLSSSPAPSRAPTAYYPFSETQTESQIVGYEEDLTGRQKIIDRVRSQSINIT
PSNEIP
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgtcctacagctccggcccggcaggtcacgccggagggcggcgggcggcgacc
ttcgccggcgcgagcgtgttcctgtcgcggaacctggtggcccccgaggtgttcgacgcc
gtgcacgacgcgctgcgcctcaatggcgcggaggtcctcctctgcgccgacccgagccgc
acgggccccttggacttccacgtcatctcatcctcctcccacgagaggttcgccgatctg
aggactaaaggctgcaatttgctaggaccacagtgcattctttcctgtgctaaagaacgc
cgttttctacctaaacagagttatacttgttgccttgcaatggatggggttaagatacta
tgttcaggctttgaaaaagctgagaaggctaagattgaagaattagtgacagccatggga
ggcattttggaaagtaagtcctccatggatgtgaactttgtaattgtaaaggatgtcatg
gctgctaaatacaaatatgctgtgaataatttgaagcctgttgtcaccatgaactggtta
gaacaatgctggattgaacaccgtgttgtgcctcatgagccctacaggattcttcccttt
gttgggttgaatatctgtgtcaccaaattgaatccagttgaaaggaaggaattggagaaa
acaatagtgcggaatggtggccagttttcaggctgtcttacacggaagtgcacccattta
gttgcaaatgaacctggaggtgacaaatatgtcgtggcccgaagatggggtaatatacac
attgtaaatccaagatgggttgaacaatctgttgctcgtagagcttgcctagatgaaaat
agctaccttgtttgtcagacttggtctgcttctagtggtttaaaaacttcactcaaggaa
caacacaacccagagatcagtagtgcaagtgcaagttttcagcctgttccagcaacatca
attgatgattcagtatcaacatcacaatgtgtgcctgcttcatttggtgattcttcaaag
atcagcaacactgatattgttggtgcacctggtgtccaagaggcaaatgagatgcaggtc
gatagtcatgttgctgaggacacagaggcggaaaatgatgatctatatttatcaaactgc
agaatttctctggtgggctttgaagagaatgagttgttgaggctactcaggatgatacgc
aatggtggtggatcccggcatattttgttaaatgagaagcttacacatattatacttggt
gcgccttcggagtatgagaaaaaagaagtaagacgtctggctgcttggggtgtaataaat
gtagtgaaagtaacgtggttagaagactgcaatagagaaaaaaaggaagtaaaagtatct
ccaactcatgtggctactgagctactcttgaaagagttttcacatgtgactatggaaaaa
tcttctggtacacgtgaaacgaaggtagccaagagctctagtgggatttttcatgtccca
actgttaatgactcacatgggaatcaacttgaaaaagatatgtcatctgaaagaaaacca
gctagaggcaaacatgaaaacagcatgaacaaaacccgatcagcaaccaggtctgcaaat
tcaagccaacaaaatgcagtggtcaatattagcaagcatgatcccaaatctcaaggagca
tccacagtgaattcaggaaatagcagatcaaatgttttcaaagggataacatttggcttc
tcaaattcattttctcatgataagagacctgaggttattgattggatcagagaaggtgga
ggcattgtggtgggtgatatacaatctaaaactgtgaattacacaattgagtgccatgga
cgaaacagcatgccttgtgacttctctcattcaacagttgtttcaacacattggatacgc
tcatgtttggaggtggcttgcttacaagaagttggaagccatcctatcttctctcctttg
cgctgtcgcatcccattaccaggatttgaaaagttccgtttctgtatctcactttcacaa
tatgaaaagaaagaaagctatctgctgaagaacttgtgcttcgctttaggcgctaaattt
acagaaaaggcattcaagggagtgacccatcttatctgcaaatttgcaagtggtgacaag
tatgaggtatactccaaaagaggaactccaaccattactgaagagtggctctttgagtgt
gtaaaacaggatacaattgtctcttttgatcactttcagccgaaaccacttacttctcag
gacaaagaggctgatctgtgcactgtcagtcagtattccacgcaggcaagcagatttaac
tgctctgagctgcttagtggatatcaagtaacaacaaccaatccaacagacaacttggca
ggtgatgcctcagctaatgaagaggcaattgctcctgcagttagtaaaagaaggctgcta
tctgtttctggccacgctaatgatacatgcggaaacattggaaggactgagaaacacctt
gaaactggctctgttcctgatgttgcagatgcgatagaggtcctatcgtccaagattcaa
gatgtgcaatctcctagtagtatatttgaacctgacaattctgctgttgttcaagaccag
aaagatacacactcctttggcatttcaaggagctggttgaatatgcaacagaagcaagag
aacacacctggcaccaaggtccaaagcttaagctcgtcccctgcaccctcccgagcaccc
actgcctactaccctttcagtgagacgcagacagaatctcagattgttgggtacgaggaa
gatttgaccggcaggcaaaagatcatcgacagagttcgctctcagagcattaacataact
ccatcaaacgagattccttga
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