Panicum virgatum (switchgrass): 120643923
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Entry
120643923 CDS
T07260
Name
(RefSeq) nuclear pore complex protein NUP98B-like
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120643923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120643923
03036 Chromosome and associated proteins [BR:
pvir03036
]
120643923
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120643923
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120643923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
DUF5930
KASH_CCD
TPR_MLP1_2
Mce4_CUP1
LPP
CENP-F_leu_zip
Suppressor_APC
ZapB
Motif
Other DBs
NCBI-GeneID:
120643923
NCBI-ProteinID:
XP_039776375
LinkDB
All DBs
Position
1K:53422956..53436414
Genome browser
AA seq
1399 aa
AA seq
DB search
MFGPTNPFGQSSTSPFGQNSFGTQQGFGQATPAANNPFAPKPFGSPTTTFGAQTGSSLFG
TTSTGAFGQQQSTPTFGTTSTASFGQQQSTPAFGTPSSSPFGSSPAFGASPTPAFGATSS
TFGSGSLFGQKPSFGGFGSSPSQSSPFGGTFQQTQPTFGSSTFGASTTPAFGTTTTPTFG
ATAPAFGTTTTPAFGATTTPAFGSTSPSLFGASSTPAFGSSAPGFGTSATTPFGVSSSTT
GFGSSSTPSFGTSTNAFSFGPSPSFGQTTVASGSSPFGTTSPFGVQTPAFGSQTTVPTFG
QAQFCNQAGGTSIKLYAQTPDVDGATSVTQPAKLDSISAMPEYKDKSHEELRWEDYQRGD
KGGSNPSGTPTVTPTSSTPPNTFTTNSAFNQTTPNPFSSNNPFAKNGSTSALLFNTSFNN
TSVASLSPFTSSTSTTIFGQTGVSVFPASSSPSLFPNAAPTFASSSLFGTSTPNNSSLFG
TGLSLANAQLAPPFQSFLAFTQQPSSTLAFSSGNLFRTLNTGSLFGSRPSLFTTPTYQQS
APAQTSSMFSFQPPPQPGGLPGFSNIANQALIGQQTSHYMVMQPAPVSNPFGTLPAMPQM
SIGNGGSCSSVQYGILSLPVAEKPLPIRTLSVAVPRHLLQRRIKFLPRKYNPISDGKVPF
FADDAESPATPKAGAFFIPRENPRNLIICPLEQWPSHSGINRQSVPKDSAGLDKYEDAST
EKAVKSPRCSPLVENGKQHEPSHHGNGKGTSVKGLLPKLPQADYFTEPNLEELAAKERGE
PGYCGLVEDFVVGRHGYGSIKFLGETDVRGLDLESVVEFNNREVIVYKDDSKKPPVGEGL
NKAAEVTLLNIKCVNTKTGGEYLDGPQVDSYTQMLVRMTEEQGAEFVSFDVAMGEWKFRV
EHFSTYGLWDVAGESEERRVLQKEQDAESACQIKKIIWDDDTTSLFNHICSQEITQGNME
VGKLSVEILWEKLAKEGIQCTNYQIQNKWDDLKRLHSFWHNQVLGSKVKIKDEKFWKRVL
KSRESKIEYRNLRHGPPQDIEYRDIMFGKKSAQNSSRRDQQLKKDPDCLQITVQELKEER
ENLKNDLEKVKEERENLKNDLKKVKEELKSAQDSSRRAQQLKKDLDCLQITVQELKEERE
NLKNDLEKVKEERENLKNDLKKVKEEFKLIGMQKDMEKQLSTMIPASVAKESKKLETSLG
RSMEKSIKAHIDTFWVRLQEENTKREKADRERMQQLVTLITNSINKDIPANLEKSLKKEI
SSLGPVVARAITPIIEKCLASVVSDSVQKGVGDKVCNQLDKSISGKLEATLARQIQMQFH
TSVKQALQDALHTSFESLLVPAFEQSCKTMFEQVDGAFQKGMSEHTVAIQQQVETAHTPL
ALTLKETINSASSITQSFS
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgttcggccccaccaacccatttgggcagtcatcaaccagcccatttggccagaactca
ttcggaacccagcagggatttggccaggctacccctgctgctaacaacccctttgcgcca
aaaccgtttggcagcccaaccacaacttttggggcacagactggaagctcacttttcggc
actacatccactggtgcctttggccagcagcagtccactcccacatttggcactacatcc
actgcttcttttggccagcagcaatccactcccgcatttggcaccccgtcctcctctcca
ttcgggagctctccagctttcggtgcatcgcccactcctgcctttggtgctacatcctct
acctttggctctggatctttatttggacaaaagccaagttttggaggttttggatcatct
cctagccaatcaagtccttttggtggcacgttccagcaaacacaaccgacatttggcagc
agcacttttggtgcatcaactacaccggcattcggtaccacaactacgccgacatttggt
gcaactgcaccagcctttggcaccacaactacaccggccttcggcgccacgactacccca
gcatttggttcaacatcaccatctttatttggtgcttctagcaccccggcgtttggctca
tccgctcctggttttggaacttcagcgaccacaccatttggtgtgagtagtagtactaca
ggttttggatcttccagcacaccgtcatttggcacatcaaccaatgcattcagttttggt
ccttcaccatcgtttggacaaacgacagttgcctctggtagttccccctttggaacaaca
tcacctttcggtgtgcagactccagcatttggctcacaaacaacagtacccacttttggg
caagcacaattttgtaatcaagctggaggaactagtataaaactttatgctcaaacacca
gatgttgatggtgctacaagtgttactcagccagcaaaacttgattccatatcagcgatg
cctgaatacaaagacaagagtcatgaagaattgaggtgggaagattaccagcgcggagac
aagggtggatcaaacccttctggaactccaacagtgacacctacctcatcaacaccaccg
aatacttttacaacaaacagtgcatttaaccaaactactccaaacccattttcatcaaac
aatccatttgctaagaatggttcaactagtgcattactattcaacacctcatttaacaat
acatcagttgcaagtttgagcccattcacatcgtccactagtaccacaatctttggacaa
acaggtgtttctgtatttccagcaagtagttcaccatctttgtttccaaatgctgctcct
acttttgcttcatcttcattatttggcacatcaacaccaaataattcaagtctattcggc
actggtttgtcgttggctaatgctcaattggccccaccatttcaatctttcctcgcattt
acacaacagccatcaagtacactagctttctcctctggaaacctatttcgcacacttaat
actggcagtctgtttggcagcagaccttcactttttacaacgccaacatatcaacaatct
gcccctgctcaaacttcaagcatgttctcctttcaacctccgcctcaaccaggtggactt
cctggtttttcaaacattgctaatcaggccctcattggacagcaaactagccattatatg
gtcatgcaacctgctcctgtctcaaatccatttgggacacttccggccatgcctcaaatg
tccattggtaatggtggatcttgttcttcggttcaatatggaatattgagtttgccggtt
gctgagaagcctcttccgattagaacattgtccgtggcagttcctaggcatttattacaa
agaaggatcaaatttctgccaagaaaatataatccaatatcagatggcaaggttccattc
tttgctgatgatgctgaatctcctgcaactccaaaagctggtgcttttttcatccctaga
gagaacccgaggaatctgataatctgtccactcgagcagtggccctcacatagtggaatt
aacaggcaatcagttccaaaggattcagctggtttggacaaatatgaagatgcatccact
gaaaaggctgtcaagtcaccaaggtgcagtcctctggtggaaaatgggaagcagcatgag
cccagtcatcatgggaatgggaagggcacttcagttaaggggctgttgcctaagctccct
caggcagattacttcacggagcctaatctggaggagcttgctgccaaagaacgtggtgag
ccaggctactgcggtctggtggaggactttgttgtggggcgccatggctatggcagcatc
aagttccttggggagacggatgtgcggggcctggatttggagtcagttgtggagttcaac
aacagggaggttattgtgtacaaggacgacagcaagaagcccccggtgggtgaggggctt
aacaaggctgcggaggtgactcttctgaacatcaaatgcgtgaacactaagacagggggg
gaatatctagatggcccgcaggtggacagttatacacaaatgcttgtgaggatgacggag
gagcagggagcagagtttgtgtcctttgatgtggccatgggagagtggaagttcagggtg
gagcacttcagcacctacgggctctgggatgtggcaggggaatcggaggagaggcgggtg
ctgcagaaggagcaagatgctgaatcagcatgtcaaataaaaaaaataatttgggatgat
gatacaacatcattgtttaaccatatatgttcccaagaaattacccaagggaacatggag
gttggaaagctttcagttgaaatcttatgggagaagctcgcaaaggaaggaattcaatgt
accaattatcaaattcaaaataaatgggatgatttgaaaaggctacatagtttttggcac
aatcaagtgttggggtccaaagtgaaaataaaagatgaaaagttttggaagcgtgtattg
aagtctcgggaatcaaagattgagtatagaaacttaagacatggcccaccgcaagacatt
gaatatcgtgatataatgtttggaaagaagtcagcgcaaaattcttctcgaagagatcaa
caattaaagaaagatccagattgtttacagatcactgttcaagagttgaaggaagagcga
gagaatctaaagaatgacttagaaaaagtgaaggaagagcgagagaatctaaagaatgac
ttaaaaaaagtgaaggaagagttgaagtcagcgcaagattcttctcgaagagctcaacaa
ttaaagaaagatctagattgtttacagatcactgttcaagagttgaaggaagagcgagag
aatctaaagaatgacttagaaaaagtgaaggaagagcgagagaatctaaagaatgactta
aaaaaagtgaaggaagagttcaagctcatagggatgcagaaggacatggaaaagcagttg
agtactatgattcctgcctcagtggcaaaggaaagcaaaaaactcgagacatcattaggg
cgcagcatggagaaatctatcaaggctcacattgataccttttgggttcgtctccaggaa
gaaaacactaagcgtgaaaaggctgacagagaacgaatgcagcaattggttactctcatt
acaaactcgataaacaaggacattcctgctaatctggagaaatcacttaagaaagaaatc
tcgtcacttgggcctgttgttgctcgagcaattacacctattattgagaagtgcctagcc
tctgtggtttctgattcagttcagaaaggggtgggtgacaaggtgtgcaatcagctggat
aaatctattagtgggaaacttgaagctacacttgccaggcaaatccaaatgcagttccat
acatctgtaaaacaggctcttcaggatgctttgcacactagctttgaatcattgcttgtt
ccagcatttgaacaatcatgcaagacgatgtttgagcaagtagatggtgcatttcagaaa
ggaatgtctgagcacacagttgctattcagcagcaagttgagacagcacatactccatta
gcgttaacattaaaggaaaccatcaattctgcatcatcaatcacccagagtttttcgtga
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integrated database retrieval system
