Panicum virgatum (switchgrass): 120644165
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Entry
120644165 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120644165 isoform X1
KO
K17302
coatomer subunit beta'
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120644165
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120644165
Membrane trafficking [BR:
pvir04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
120644165
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
120644165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pkinase
PK_Tyr_Ser-Thr
WD40_Prp19
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_EML
EIF3I
Motile_Sperm
WDR55
ABC1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
PEP5_VPS11_N
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_2nd
Beta-prop_SCAP
RIO1
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Cep192_D6
APH
Motif
Other DBs
NCBI-GeneID:
120644165
NCBI-ProteinID:
XP_039776672
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Position
8K:20125505..20178773
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AA seq
852 aa
AA seq
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MEKGSRSLQSAPLETIANAGMDSTARIYDMYETMLENILQDPSEPPVSLPLEFLEAITDN
FSSDHELGRGGYGVVYKGILRSGKVIAVKKIYDAYSIEKDNSLDEISRVMGIMHPNVVQL
IGYCAETKMDTLTHDSGKLIVAERRSRLLCFEYISNGGLHMYISKEHLDLGWDEIYKIIK
GICSGLDALHEEKIIHLDLKPQNVLMDGNMEPKIVDFGFARQLGENKSKIYTERATGTVG
YIAPEYHFHGKISPKADIFSLGVIMIELITGSRSTPHYSYTSYDNNSLDSTQAHQQFTEN
VLGKWKKIFQRTLHEASVIQVYTHQLKQLIDIALKCVDIDVNKRPTAADILQFFYQNAAG
GSSCDPICKNSQVRDLISVQPIELKFPMADPNKFQRSSCLLHLNNNTVGHVAYRMLSNSL
SPHLVWPSFGFVPPGCRYTIAVTIRNQQNPRPSNDMFFTLESTRASDQEIKNVISRHLTS
DHNDFFTKAKDKGRQVHEEKITPVYGNNDQSEIKIVPLEWSSYNWASIDVHPTEPWILLV
RRDSSTIIVWDYNTQEMARLPACRDEKVSSLFDPYGHVITPIIAKFVARKKWIIVGCRSG
YIKVYSYCEQSLFSETESFKAHEYGEVTSLELHETESYVLSAVSEWDSSVWDNPMDKIKL
WHWENGWKLICTFNTDKFIRQVKFNPNDVNIFATTTSGGPIKVWNTSSKDSISEFSGTRH
AMYLDFFSRDGALYMIIVKESDRRNPTIWDYQKMKCVATLKGHTHDVNVVFSCPEFRVLI
TGSNDGSIRLWNSSTFSLVGVLNCGLGRVMAIAWLKKPGRIAILLRDGLAITEIDLGNQL
STSEGPNESEAS
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggggagtaggtctctgcaatctgcaccattagaaacaatagcaaacgccgga
atggatagtacagcaaggatatatgatatgtacgagacgatgctggagaatatactgcag
gatccaagtgaaccaccagtgtctctgccactggaattcttggaagccatcacagataat
ttctccagtgaccatgaactcggcaggggtggttatggagtggtttacaagggaattctc
cggagcgggaaagtcattgcagtgaagaagatttatgatgcgtattctattgagaaggat
aactctttagacgagatcagccgtgttatggggatcatgcacccaaatgtggtacagctc
ataggttattgtgccgaaactaagatggatacactgacacacgacagtgggaagctgatt
gtcgcggaaagacgctcacggttgctctgcttcgagtatattagcaatggaggcctccat
atgtatatttccaaagaacatttggaccttggttgggacgagatatacaagataattaag
gggatctgtagtggtttagatgcccttcacgaagaaaagattattcatctggacctgaag
ccacagaatgtattgatggatggtaatatggaacccaaaattgtcgactttggtttcgca
aggcagttgggcgaaaataaatccaaaatatacactgagagggccacaggaacagtcgga
tacatagcaccggaataccattttcatggcaaaatatctcccaaggcagatatatttagt
ttgggtgttataatgattgagttaatcacaggaagtaggagcacgccacattattcctac
acctcttatgacaataatagcctcgatagtacccaagcacatcagcaattcaccgagaat
gtgcttggaaaatggaagaaaatatttcaaagaacactgcatgaagcatctgtcattcaa
gtttatacccatcagttgaagcaattgattgatatagccctaaaatgtgtggacattgac
gttaataaaagacctactgcagcagatatactgcaatttttttatcagaatgcagcagga
ggaagttcatgtgatccaatatgcaaaaatagccaggttagagatctcatcagcgtgcaa
cccatcgagctcaaattccccatggcagatccaaacaagttccagaggtcttcatgcttg
ctgcacttaaacaacaacacagttggacatgtcgcctacaggatgctttccaatagtcta
tcgccgcatttagtttggccgtcatttggttttgtgcctcccgggtgcaggtacactatt
gctgtcacaatacgcaaccagcaaaatccacgacccagcaacgacatgttttttacacta
gagagcaccagagcgagtgatcaggaaataaagaacgtcatttcaaggcatttaacgtcc
gaccacaacgatttttttacgaaagcaaaagataaaggccgccaggtgcatgaggaaaaa
attactcctgtttatgggaataatgatcagtccgaaatcaagatcgtacccctggaatgg
tctagttataattgggcttccattgacgtgcatccaacggagccatggattctgttggtc
cgtagggacagctcaactatcatcgtctgggactataacacgcaggagatggcacgcctc
ccagcttgccgagatgaaaaagtgtcttcgttatttgacccatatggtcatgtaatcaca
cctattattgcaaagtttgttgcacgaaagaagtggattatagtcggatgtaggtctggt
tacataaaagtgtacagttattgcgaacagtctctgttttctgaaacagagagctttaaa
gcgcatgaatatggtgaagtaacctcattggaactccatgaaactgagtcttatgtacta
tcggcagtcagcgaatgggattcatccgtgtgggataacccaatggacaagataaagttg
tggcactgggagaacggctggaaactaatctgcacatttaacacggataaatttattcgt
caggtcaaatttaacccaaatgacgtaaatatatttgctactacgacttctggtgggccg
ataaaggtctggaataccagttcaaaagattcaatatctgaattttctggaacacgacat
gcaatgtatttggatttcttttcaagagatggcgcgctgtacatgattattgttaaagaa
tcggataggagaaatcccacgatatgggattaccagaaaatgaaatgtgttgcaacactc
aaagggcacacacatgatgttaatgtagtcttttcgtgtcctgaatttcgggtactgatt
acaggttctaatgatgggtcaattcgtctatggaactcaagtactttcagtcttgtgggt
gtactgaactgtggcctcggaagagtgatggctatagcatggttaaagaaaccaggaaga
attgcaatcttacttcgtgatggattagctattactgaaattgacctgggcaatcagttg
tcgacatctgaaggaccgaacgagtcagaggcaagctag
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