KEGG   Panicum virgatum (switchgrass): 120644304
Entry
120644304         CDS       T07260                                 
Name
(RefSeq) SKP1-like protein 1
  KO
K03094  S-phase kinase-associated protein 1
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03083  Polycomb repressive complex
pvir04120  Ubiquitin mediated proteolysis
pvir04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    120644304
   04120 Ubiquitin mediated proteolysis
    120644304
  09126 Chromosome
   03083 Polycomb repressive complex
    120644304
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120644304
   04121 Ubiquitin system [BR:pvir04121]
    120644304
   03036 Chromosome and associated proteins [BR:pvir03036]
    120644304
Membrane trafficking [BR:pvir04131]
 Endosome - Lysosome transport
  Acidification regulators
   RAVE complex
    120644304
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Adaptor protein
     120644304
   Cul7 complex
     120644304
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     120644304
  Centromeric chromatin formation proteins
   Kinetochore proteins
    CBF3 complex
     120644304
SSDB
Motif
Pfam: Skp1 Skp1_POZ
Other DBs
NCBI-GeneID: 120644304
NCBI-ProteinID: XP_039776845
LinkDB
Position
8K:26517006..26519004
AA seq 176 aa
MAAEGDKKMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVI
EYCNKHVHAAAAAAAASKAGSDDAGAAVANSNAASGEDLKNWDADFVKVDQATLFDLILA
ANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE
NT seq 531 nt   +upstreamnt  +downstreamnt
atggcggccgagggcgataagaagatgatcaccctcaagagctcggacggcgaggagttc
gaggtggaggaggcggtcgccatggagtcgcagaccatccgtcacatgatcgaggacgac
tgcgccgacaacggcatcccgctccccaacgtcaactccaagatcctctccaaggtaatc
gagtactgcaacaagcacgtccacgccgcggccgcagcggccgcggcgtccaaggccggc
tccgacgacgctggggcagccgtcgccaacagcaacgctgcctccggtgaagaccttaag
aactgggacgccgacttcgtcaaggtcgatcaggccacgctgttcgacctcatcttggct
gcaaactatctcaacatcaaggggctgctggacctgacgtgccagactgttgctgacatg
atcaagggcaagactcctgaggagatccgcaagaccttcaacatcaagaacgacttcacc
cctgaggaggaagaggagatccgcagagagaaccagtgggccttcgagtag

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