Panicum virgatum (switchgrass): 120644310
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Entry
120644310 CDS
T07260
Name
(RefSeq) nod factor hydrolase protein 1-like
KO
K01183
chitinase [EC:
3.2.1.14
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00520
Amino sugar and nucleotide sugar metabolism
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00520 Amino sugar and nucleotide sugar metabolism
120644310
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.14 chitinase
120644310
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_18
Motif
Other DBs
NCBI-GeneID:
120644310
NCBI-ProteinID:
XP_039776849
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Position
8K:26817500..26819085
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AA seq
452 aa
AA seq
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MARPRRVSLTISLISLVEFLSLASASTLQQLCADGGGGPAAGVRAGYWSQTSSRYSPVSS
IDASLFTHLYYSSVSIDEASYAVVPLPADEAPLLAAFSSTVKSGSPSVKTMLSIGTDEYR
VDVSNAAFSRMASDRSLRGVSINSSVELARANGFDGLDLSWIFPATQLDMENLGVLLAEW
RAKITEESATNSLSEPLLLTATLYFSNHLFDMPDSNLNYPIDDISSNLDWANILTFGFNG
GSNVTTVDAPLYDVTSHFSVSYGVISWLDAGVPPCKLVMGIPLFGRSWFLRNKAKNGIGS
PTAAAGTKQRKSNQTGIIAYAEVQEYMDSATTVVTYDSQSVAEYFYNGDLWVSFDSSQVV
QRKLEFAARSQLLGYFLWTVGFGDSNSTISKQATESWHQYAQDGFGTMHAGGSNQYVAFN
SSSVSSGGWYWKILSYLLSSVLLLVTLSHSGY
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggccacggcgtgtcagtctcaccatatccctcatctccctcgtcgaattcctg
tcacttgcttctgcgtcaacgttgcagcagctatgcgccgatggcggcggcgggcctgcg
gctggagtgagagccggctactggtcgcagacctcgagccgctactccccggtcagtagc
atcgacgcctccttgttcactcacctctactacagctcggtgtccattgacgaggcgagc
tacgccgtagtgcctctgccggccgacgaggccccgctgctcgccgccttctccagcacc
gtcaagtccgggagcccgtccgtcaagaccatgctgtccatcggcacggatgagtaccgg
gtggacgtgtccaacgccgccttctccaggatggcttcggacaggagcctccggggagtg
tccatcaactcctcggtggaactggctcgagccaacggcttcgacggcctcgacttgtcg
tggattttcccggccacgcagttggacatggagaacctcggggtcctgctcgcggaatgg
cgggcgaagatcaccgaggaatccgccacgaactccctgtccgagccccttctcctgaca
gcaacgctgtatttctccaaccacctgttcgacatgcctgacagcaacctcaactacccg
atcgatgacatctcgagcaacctcgactgggcgaacattctcaccttcggcttcaatgga
ggcagcaacgtcaccacggtcgacgcgcctctctacgacgtgacctcgcacttctcggtg
agctacggggtcatctcatggctggatgctggagtccctccgtgcaagctggtgatgggg
atacctctgttcgggaggtcctggttcctcagaaacaaggccaagaacgggataggatcg
ccgacggcagctgctggaacgaagcagaggaagagcaaccagaccgggataatcgcgtat
gcagaggtccaagagtacatggattctgcaaccaccgttgttacctacgacagccagtca
gtggcagagtatttctacaatggtgacctctgggtcagcttcgacagctcgcaggtggtg
cagaggaagctggagtttgcagccaggtctcagttacttgggtacttcctctggacagtt
ggcttcggcgattcaaacagcacaatatcaaagcaagctaccgaatcatggcaccaatat
gcccaggatggttttggaaccatgcacgcaggaggttcgaaccagtatgttgcatttaat
tcatcttcagtatcatctggcggatggtattggaaaattcttagctatttgttgtcctct
gtactactattggtgactctatctcattcaggatattag
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