Panicum virgatum (switchgrass): 120644410
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Entry
120644410 CDS
T07260
Name
(RefSeq) rhamnogalacturonate lyase-like isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
120644410
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
120644410
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
EMC7_beta-sandw
RhgB_N
Motif
Other DBs
NCBI-GeneID:
120644410
NCBI-ProteinID:
XP_039776967
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Position
8K:complement(31094122..31098417)
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AA seq
720 aa
AA seq
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MVAAAAEACWLSFLVVILLIAVAAASKLRLAAQASLEAAAGARGVKLHVGQRQVVVDNGV
VQVAMLAPEGRITGVGYGGEPSNLLEYDAGQGDSGGYWDSVWNYPGSDLPGQYNTLDSTE
FNVVSSSEDQVELSFRSTYSPSLHNSFRLNIDKRLVMLKGSSGFYCYAIFEHARDCPALN
ITEARLVFKLNMGKHVFAYLKCARFNYMAITDDIQRYMPSAIDRDEPRAVPLAYKEAVLL
VDPKEPQFRGEVDDKYQYSLDNKDNVVHGWISGGDPNPMGFWVITPSNEFKSGGPFKREL
TSHVGPTSLTMFFGTHYIGKYMVAKIDNGESWKKVLGPVFIYLNSSPKSGNTPQALWEDA
KAQAQAEARNWPYSFLASPDFPKAAERGSITGRLLVRDSYMSKKDIPAALAYIGLAAPGQ
AGSWATESKGYQFWTWAASDGAFSIDNVREGVYNLYAFVPGILGDYCYSSPLTIAPGRVM
SVRDLVFEPPRSGPTLWEIGVPDRTAAEFYVPDPDPKYINRLFVNKDRYRQYGLWERYAA
LYPENDLVFTVGKSDESKDWFFAQPTRKVGQDTVPTTWRIRFGLDRVVAGGTYTLRIALA
ASETCRLQQVQVNDGGGGGGVFTTPVMGDDNAIARHGIHGLQWSLEFAIGGHLLLQGDNA
IDIKVAGAGGPAADRIAGVMYDYIRLEGPSSGGVLKIAPLGRVWMGIFFLSSVALVVMSQ
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggttgccgccgctgctgaagcctgctggttgtcgttcctcgtcgtcatcctactcatc
gccgtggcagcggcttcgaagctgcggcttgcggcgcaggcctcgctggaagcggctgct
ggcgcccgtggtgtcaagttgcacgtcggccagcggcaggtggtcgtggacaacggcgtg
gtgcaggtggcgatgttggcaccggagggccggatcaccggcgtcggttacggcggcgag
cctagcaacctgctggagtacgacgccggccagggagactccggagggtactgggattcg
gtttggaactatcccggctctgatcttccgggacaatacaatacgttggatagtacagag
ttcaacgtagtatcctcaagtgaagatcaagtggagctttctttcaggagcacatacagc
ccatctcttcacaacagctttcggctaaacatcgataagaggcttgtgatgctcaaaggt
agttctgggttctactgctatgccatctttgagcatgccagggactgccctgctctgaac
atcaccgaggctcggctcgtcttcaagctcaacatgggaaagcatgtttttgcctacctc
aaatgtgctaggttcaattacatggctattacagacgacatacagaggtacatgccaagt
gcaattgacagagatgaacctcgtgctgtcccactggcttacaaggaggctgttctcctt
gttgaccccaaggaaccccagttccgaggagaggtggatgacaagtaccagtactcacta
gataacaaggacaatgttgttcatggatggatcagtggcggcgatccgaaccccatgggt
ttctgggtcatcacacccagcaacgagttcaagagcggcgggcctttcaagcgggaactc
acctcccatgtcggccccacatccctcacaatgttttttgggacacattacattggtaag
tacatggtggccaagatcgacaatggcgagagctggaagaaagttttgggtccagtgttc
atctacctgaactcaagccccaagagtggcaacaccccccaggctctatgggaagacgcc
aaagcacaggcacaagccgaggcgaggaactggccctacagcttccttgcatcgccagac
ttccccaaggcagccgagaggggatccattacagggaggctcctcgtcagagacagttac
atgagcaagaaagacattcctgctgcattggcttacattgggctcgccgcgcccgggcag
gccggttcgtgggccacagagagcaaggggtaccagttctggacatgggccgcatcggat
ggcgctttcagcatcgacaatgtccgggaaggagtgtacaatctttacgcgtttgttccc
gggattcttggagactactgctacagttcacctttaaccatagctccaggtcgtgtcatg
agtgttcgtgaccttgtgttcgagcccccgaggtcaggcccgacgctgtgggagattggt
gtgccagaccggactgcggcagagttctacgtccctgaccctgaccccaagtacatcaac
aggctcttcgtcaacaaggacaggtacaggcagtacggcttgtgggagcgatacgccgcc
ttgtacccagagaacgacctcgtcttcacggttggtaaaagcgacgaatccaaggactgg
ttctttgcgcaacccacaaggaaggtaggccaggacaccgtgccgacaacatggcggata
cggttcggtttggaccgtgtcgtggcaggcggcacctacacgctgcggatcgcccttgca
gcttctgaaacgtgtagattgcagcaggtgcaagtgaacgacgggggtggcggtggcggt
gtgttcacgacgccggtgatgggggacgacaacgcgatcgcgcgccacgggatccacggc
ctgcagtggagcctcgagttcgcgatcggggggcacctgctgctccaaggcgacaacgcc
atagacatcaaagtggccggagccggaggtccggcggcggacaggatcgccggggtcatg
tacgactacatccgcctggaagggccttcctccggaggcgttctgaagattgcgcccctt
ggccgggtttggatggggatcttttttctgtcgtcggtggccttggtcgtcatgtcccag
tag
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