Panicum virgatum (switchgrass): 120644464
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Entry
120644464 CDS
T07260
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 3 isoform X1
KO
K18999
RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:
3.1.3.16
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120644464
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120644464
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
120644464
Protein phosphatases and associated proteins [BR:
pvir01009
]
HAD phosphatases
Fcp/Scp phosphatases
120644464
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
120644464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_CPL3
NIF
BRCT
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
120644464
NCBI-ProteinID:
XP_039777028
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All DBs
Position
8K:33872139..33877691
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AA seq
1219 aa
AA seq
DB search
MRVTVTPKDEERLVGLMARERPRSAVVTAGGDLVTAPGGGEGSDGDSSGSIQEITADDFR
KDSSSGGALGAGASAPLRSRSWTGPPAMGYMARSYGQAFHSFAWLQAVQKKPLVARPAPE
EEVDEDEVEHAVDDASDGEKEEGEIEEGEAVEGSSSPPRPPPETIDLDSDEKSESVVAEG
CGGAAPATAAQEVEVDYDQRVGSILEELEMISIEEAEKSFEGTCARLRTCFENLKPLYPE
NGSPVQILDPLVHQAFIGIDTLTTVAKSFNLPRREHNKTMLLKLLFHIKNRYSCMLTPDQ
RDELDSRVRQLVFEEKDNVSDPSTSAGTKVTNVPDTSGQISSGRLPFESGAANPLSASSL
LRLEVPAKRISPLLDLHADYDENSLPSPTRDNAPPFPVPKPVGFGSFPMVPERPSFPERA
EPGRNSIYPSLNDPLKAVSSYQQKYGQKSVFPSDDLPSPTPSGDEGKSADKGADIFGEVS
SIPAPKKTALPSTSQMPASQPNTVSSSNVSYAGGPPGYGKQAEQLAAGPNHALKTTSKSR
DPRLRFLNRDSAGATDVNQRVKDGNLGVGVPIINRKHKAADEPQVDENLLKRFRNGSGDP
RNMLVPTGNPNQLMTNMRALPNSSGTNTSFLQPHQSSAQISAPPAVSLPPSLLKDIAVNP
TVLMNWIKMEQQKMSASEPQQVATASAISSGMTSIGTAGMVLPPGTAPKTTEAAQVPSIR
PQVPMQTPPLNSQNDAGVLRMKPRDPRRILHSNVAQKTDAVGLEQVKSNGTTKPDSQGTK
DQTTSMVSQPALLPSIARPFTMGTKHVDPVSNSQLAATALMASMVQTSGSINRADPRLAV
EQNGHNADAANAPAIPLEAVQPVSPWGDVDHLLDGYDEQQKALIQKERARRITEQQKMFS
ARKLCLVLDLDHTLLNSAKFIEVDSIYEEILRQKEEQDRSLPERHLYRLHHMNMWTKLRP
GIWNFLEKASKLFELHLYTMGNKLYATEMAKVLDPTGTLFAGRVISRGDDGDPFDSDDRV
PKSKDLDGVLGMESAVVIIDDSVRVWPHNRHNLIVVERYTYFPCSRRQFGLPGPSLLEID
RDERPEDGTLASSLAVIERIHRNFFSHPNLNEADVRSILAAEQQRILAGCRILFSRVFPI
GDTKPHVHPLWQTAEQFGAVCTNQIDDRVTHVVANSLGTDKVNWALSTGRFVVHPGWVEA
SALLYRRANELDFAVQTTC
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgtgacggtcacgcccaaggacgaggagcggctggtcggcttgatggcgcgggag
cggccgcggtcggcggtggtgacggcgggcggggatttggtgaccgcccccggcggtggc
gaggggtcggacggggactcgtcggggtcgatacaggagatcaccgccgacgacttcagg
aaggactcgtcgtccggcggcgcgttgggggccggtgcttcggcgccgctgagatctagg
tcttggacgggcccgccggccatggggtacatggcgcggagctacgggcaggcgttccac
agcttcgcgtggctgcaggccgtgcagaagaagccgctcgtggcgcgcccggccccggag
gaggaggtggacgaggacgaggtggagcacgccgtggacgacgcctcggacggggagaag
gaggagggcgagattgaggagggggaggctgtggagggctcgtcctcgcccccgcgaccg
cctcccgagaccatcgatttggactccgatgagaagtcggagtcggtggttgcagagggg
tgcggcggcgcggcgcctgctacggccgcccaggaggtggaggtggactatgaccagcgc
gtggggagtatcctggaggagctcgagatgatctccattgaggaagctgagaagtcgttc
gagggcacgtgcgcacgtctgcgtacatgctttgagaacctgaagccgctgtacccggag
aatgggagcccagtgcaaattcttgatcccctagtgcaccaagcgttcattggaattgac
acactcaccactgtggcgaagtcgttcaacttgccgaggagggagcataataagacaatg
cttttgaagttgttgtttcacatcaagaacagatattcatgcatgctgacacccgaccag
agagatgagctggacagccgtgtgaggcagttagttttcgaggaaaaagacaacgtcagt
gacccaagtaccagtgctggcacaaaagtgacaaatgtaccggatacatctggtcagatt
tcatcagggagattgccatttgaatctggagcagcaaatccattaagtgcctctagcttg
ctgaggttggaagtacctgcaaaaaggattagtcccttgttggatcttcatgcagactat
gacgagaacagcttaccttcgcccacacgggataatgcacctccttttcctgtgccaaag
cctgttgggtttggatcatttccaatggtacctgagcgtccatctttcccagagagagct
gagcctggaaggaattcgatatatccatccttaaatgatcctctgaaggctgtttcatca
tatcagcagaagtacgggcagaaatctgtctttccaagtgatgatctgccaagtccaact
ccttctggtgatgagggtaaatctgcagacaaaggagctgatatatttggtgaagtttcc
agcatcccagctccaaagaagactgcactgccaagtacaagtcagatgcctgcctcccaa
cctaacacagtcagcagcagcaatgttagttatgcaggtggtccacctggctatggtaaa
caagctgagcagttggctgctggtccaaatcatgcactaaagactacatccaaaagtaga
gatccaaggctcaggtttttgaaccgtgattctgctggtgccacagatgtgaatcagcgt
gtgaaggatgggaatttgggtgttggagttccaattattaaccgtaaacacaaggcagcg
gatgaacctcaggtggatgaaaacttgttaaaaagatttaggaatggttccggggatcca
agaaacatgctggtgccaacagggaatccgaatcagcttatgaccaacatgagggctctg
ccaaatagcagtggaacaaatacatcatttttgcaaccccatcaaagttctgcacaaatc
agtgcacctcctgctgtttcattgccgccttctctattaaaggatattgctgtgaaccca
acagtgctgatgaattggattaaaatggaacagcagaagatgtcagcatcggaacctcag
caggtagctactgccagtgccatctctagtggtatgaccagtattggaactgctggcatg
gttttaccacctggcactgctccaaagaccacagaagctgcacaagttccctccattagg
ccacaggttcctatgcagacaccacctttgaactcacaaaacgatgccggtgtactacgt
atgaagccccgtgatcccaggaggatccttcatagtaacgtagcccagaaaactgatgca
gtgggcttggagcaagtcaaatctaatggaactactaagccagattctcagggaaccaaa
gatcagactacttcaatggtttctcaaccagcattgctgcctagcattgcacggccgttc
accatgggcacaaagcatgtcgatcctgtctcaaattcacagttagctgctacagctctt
atggcttccatggtacaaacctcaggcagcataaatagggcagatccgaggctagcagtt
gaacagaatggtcataatgctgatgcagcaaatgctcctgcaataccacttgaagctgtg
cagccagttagcccatggggtgatgttgatcatctccttgatggttatgatgaacaacag
aaagctctcatacagaaggaaagggcaagacggatcacagaacagcaaaaaatgttttca
gcgcggaagctatgcctggtgcttgatctggatcacactctacttaattctgcaaagttt
atagaagtggactctatatatgaagagatcttacggcagaaagaggaacaggacaggtca
ttgccagaacgccatctctatcgtcttcatcatatgaatatgtggacgaaactgagacca
ggaatatggaacttccttgagaaggcgagtaagctctttgagctgcatctgtataccatg
ggaaacaaactctacgctactgagatggccaaggttcttgaccctactgggaccttgttt
gcggggcgagtcatctcaagaggtgatgatggtgatccatttgacagtgacgatcgagtg
cccaagagtaaagatctggacggtgtgttggggatggaatctgcagtggtaatcatagat
gattctgtgagagtgtggcctcacaacagacataatttgatagttgtagagagatacaca
tatttcccctgcagcagacgtcaatttggccttcctggaccatcgcttctcgagatagac
agagatgagaggccagaggatggtacccttgcttcttcactggcggtcattgagcggatt
caccgcaacttcttttctcatcctaacctcaatgaggctgatgtgcgaagcatactagca
gctgagcagcagaggatccttgctggctgtcgtattctctttagccgggttttcccgatt
ggggataccaaaccccacgtgcatcctctgtggcagactgcagagcagtttggtgcagtc
tgcacgaaccagattgatgatcgggtcactcatgttgttgccaactccctcgggacagac
aaggtgaactgggcactatccactggcagattcgtggtgcacccaggatgggtagaagct
tcagctctgctgtaccggcgcgcaaatgagcttgattttgccgtccaaacaacctgctga
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integrated database retrieval system
