Panicum virgatum (switchgrass): 120644540
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Entry
120644540 CDS
T07260
Name
(RefSeq) probable indole-3-acetic acid-amido synthetase GH3.13
KO
K14487
auxin responsive GH3 gene family
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120644540
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Motif
Pfam:
GH3
GH3_C
GH3_M
DUF7350
Motif
Other DBs
NCBI-GeneID:
120644540
NCBI-ProteinID:
XP_039777123
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Position
8K:37487712..37492580
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AA seq
675 aa
AA seq
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MHACMDLTTMSTTTTSTSPEPDHDRGHHLPSSTSLVIPPPSSPAAAAAMPVPPPPPALPP
TIPAFDPHDGPASLQLIEDLTTHAGAIQRRVLREILAENAGADYVRHFFGADAASRGADE
LAAAFKSRVPVVEYEDVKPYIERIANGAPSSLITSRTITELLTSSGTSGGQPKLMPSTAE
ELDRKTFVYNLLIPVMNRFVPGLDEGRCMYLLFVKPEVTTPSGLAARPVLTSYYKSRHFR
ERPDSPYARYTSPTAAILCPDSAQSMYAQLLCGLARRGEVLRVGAVFASAFLRAVKFLER
HWRALCADLRAGRVDAARVADPACRAAVSAVVAGPDQALADAVAAECAAPSWRGIVRRLW
PRTKYIDVIVTGSMAQYIPLLEFYGGGLPLVSAMYASSECYFGINLRPLDPPEEVSYTLL
PNMCYYEFVKVEKDGEEVRDGEVVDLVDVEVGGHYELVVTTFAGLYRYRVGDILQVSGFH
NAAPQFRFVHRRNVVLSVDTDKTSEDDLLRAVTAAKRLLAPLGAILSEYTAYADTASIPG
HYVLFWELTPPPLPASGGGDEEAVGRAMAACCAAVEAGLDAVYRRCRSRDRSVGPLEIRV
VSPGAFDALMDLCVSHGSSVNQYKTPRCVKHPDAIAVLEARVVGRFFSVAVPHWEPPFQV
VAGAGAASLDEGTLA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgcacgcgtgcatggatctaacaacaatgtcaaccacgacgacgtccacgtccccagag
cccgaccatgaccgcggtcaccacctcccctcctccacctccttggtgatcccgccacca
tcgtcgccggcggcggcggcggcaatgccagtgccaccgccaccgccggctctgccgccc
acgatcccggccttcgacccgcacgacgggccggcgagcctgcagctgatcgaggacctg
accacccacgccggcgccatccagcgccgcgtcctccgcgagatcctcgccgagaacgcc
ggcgccgactacgtccgccacttctttggcgccgacgccgcgtcccgcggcgccgacgag
ctcgccgccgcgttcaagtcccgcgtccccgtcgtcgagtacgaggacgtcaagccgtac
atcgagcgcatcgccaacggcgccccctcctccctcatcacctccaggaccatcaccgag
ctcctcaccagctccggcacctccggcgggcagccgaagctgatgccgtcgacggcggag
gagctcgaccgcaagaccttcgtctacaacctcctcatccccgtcatgaaccgcttcgtg
cccggcctcgacgagggccggtgcatgtacctgctcttcgtcaagcccgaggtcaccacg
ccgtcggggctggcggcgcggccggttctgacgagctactacaagagccgccacttccgg
gagcggcccgacagcccctacgcgcgctacacgagcccgacggcggcgatcctgtgcccg
gacagcgcgcagagcatgtacgcgcagctgctctgcggcctcgcccgccgcggcgaggtg
ctccgcgtcggcgccgtcttcgcctccgccttcctccgcgccgtcaagttcctggagcgc
cactggcgcgcgctctgcgccgacctccgcgccggccgcgtcgacgccgcgcgcgtcgcg
gacccggcgtgccgggcggccgtgtccgccgtggtggcggggccggaccaggcgctggcc
gacgccgtcgccgccgagtgcgcggcgccgtcgtggcggggcatcgtgcgccggctctgg
ccgcggaccaagtacatcgacgtgatcgtgacggggtccatggcgcagtacatcccgctg
ctggagttctacggcggcgggctgccgctggtgtcggccatgtacgcgtcgtccgagtgc
tacttcggcatcaacctccggccgctggacccgccggaggaggtctcctacacgctgctg
cccaacatgtgctactacgagttcgtcaaggtggagaaggacggcgaggaggtccgggac
ggggaggtggtggacctcgtcgacgtcgaggtcggcggccactacgagctcgtcgtcacc
accttcgcagggctgtaccggtaccgggtgggcgacatcctgcaggtgtcggggttccac
aacgcggcgccgcagttccggttcgtgcaccgccgcaacgtggtgctcagcgtggacacc
gacaagacctccgaggacgacctcctccgcgccgtcaccgccgccaagcgcctcctggcg
ccgctcggcgccatcctctccgagtacacggcctacgccgacacggcgtccatcccgggc
cactacgtcctcttctgggagctcaccccgccgccgctgcccgcctccggcggcggcgac
gaagaagccgtgggccgcgccatggccgcgtgctgcgccgcggtggaggccgggcttgac
gccgtgtaccggcggtgccggagccgcgaccggtccgtgggcccgctggagatccgcgtg
gtgagccccggcgccttcgacgcgctcatggacctctgcgtctcccacggctcctccgtg
aaccagtacaagacgccgcgctgcgtcaagcaccccgacgccatcgccgtcctggaggcg
cgcgtcgtcggcaggttcttcagcgttgccgtgccgcactgggagccgccgttccaggtc
gtcgccggcgccggcgccgccagcttggacgaagggacgctggcgtga
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