Panicum virgatum (switchgrass): 120644575
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Entry
120644575 CDS
T07260
Name
(RefSeq) ATP-dependent DNA helicase At3g02060, chloroplastic-like isoform X1
Organism
pvir
Panicum virgatum (switchgrass)
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CarD_TRCF_RID
Cas3-like_C_2
TRCF
RecG_dom3_C
AAA_19
Motif
Other DBs
NCBI-GeneID:
120644575
NCBI-ProteinID:
XP_039777151
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Position
8K:38473250..38484984
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AA seq
822 aa
AA seq
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MAAPPARAPPPPHPLLLLRLRPPPARILPPRRLRPRHLALAAAATAAAASVAPDDISQLN
YRLRAIARRRDAAATAPASSSSAPVDPAQAEAFLRTIRDQQRLGLRQLRGEEAEGEGEGD
EEEGGERARKGVAAGSSLGHRVDPRELEPGEYVVHKKVGVGRFACISAEDGVDYVFIQYA
DAMAKLAVDQAARMLYRYNLPHEKKKPRNLSKLNDPSTWEKRKLKGKLAIQKMVVNLMEL
YLQRMRQSRPPYPKPLAMDEFAAEFPYEPTPDQCQAFIDVEKDLTERETPMDRLICGDVG
FGKTEVAMRAIFIVVSAGYQAMVLAPTIILAKQHYDVMTERFATYREIKLAIFSGAQSKE
EKDELITKIKNGNLHIIVGTHALLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASID
VLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVKTYVSAFSKERALSAIKFELQRGG
QVFYVVPRIKAIDDVLQFLKDSLPDVPIAVAHGKKMSKNIQFAMEKFAIGEVKILVCTHI
IESGIDIANANTMIVQFAELFGLAQLYQLRGRVGRSGREGFAYLFYTDKSLLSRVATDRL
GAIEEHSELGQGFHVAEKDMGIRGFGSLFGDQQSGDVANVGIDLFFDMLFDSLSKVDQFC
LVPVPYKDVELDISISPHLSSEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRRYG
KEPRDMELLLKKLYVRRMAADLGISRIYPSGKTIFMKTNMNKKVFRLMTEAMTSETHRNS
LLFVGKEIKAELLVSLPDTLLLNWLFHCLADCYAVVPALVKY
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggccgccccgcccgctcgcgcgcccccgcctccgcaccccctgctcctgctccgcctc
cgcccgccgcccgctcggattctcccgccccgccgcctgcgcccgcgccacctcgccttg
gcggcggccgccacggccgccgcggcctccgtggcccccgacgacatctcgcagctcaac
taccgcctccgcgccatcgcccgccgccgcgacgccgccgccaccgcgccggcctcctcg
tcctcggcccccgtcgaccccgcccaggccgaggcgttcctccgcacgatccgcgaccag
cagcgcctcggcctccgccagctccgcggggaggaggcggagggcgagggggagggggac
gaggaggagggcggggagagggcgaggaagggggtggcggcggggagctcgctggggcac
cgggtggacccgcgggagctggagccaggggagtacgtcgtgcacaagaaggttggcgtc
ggcaggttcgcctgcatcagcgccgaggacggtgtcgactacgtcttcatccagtacgcc
gacgccatggccaagctcgccgttgaccaggccgcgcgcatgctctacagatacaacctg
cctcacgagaagaagaagccacggaatttgagcaaactgaatgatccttctacctgggag
aagcggaagctgaaaggaaagcttgctattcagaagatggtcgtcaacctgatggagttg
tatttgcagaggatgcggcagagcagacctccatacccaaagcctctggcaatggacgag
tttgctgctgaatttccgtatgagcctactccagatcaatgccaggcttttatagatgtt
gagaaggatctgacggaaagggaaacaccaatggatagattaatctgtggagatgtaggc
tttggcaaaacagaagttgcaatgcgtgctatattcattgttgtatctgcgggatatcaa
gctatggttctcgcaccaacaataatacttgctaagcaacactatgatgtaatgactgag
cgttttgccacctatcgagaaataaagcttgccatatttagtggtgctcagagcaaagag
gaaaaagatgagctaataacaaagattaagaacggaaatttgcatatcattgttggaact
catgctctccttactgaaaggatggcctataacaatcttggtcttctagtggtggatgaa
gaacaaaagtttggtgtccaacaaaaggagaagattgcatcatacaaagcttctattgac
gttcttacactctctgcaacacccataccacgtaccttgtatctggctttgactggtttc
cgtgatgcaagtttaatgtctacaccacctcctgaaagagttgctgtaaagacatatgtg
tcagcatttagtaaagaaagggccctatcagctatcaagtttgagctacaacgtgggggt
caagtcttctatgttgtaccacgaataaaagcaatagacgatgtgttgcagtttctcaag
gactctctgccggatgtaccaatcgctgttgctcatggaaagaaaatgtcaaagaacata
caatttgctatggaaaagtttgctattggggaagtaaaaattcttgtctgcacgcatatc
attgaaagtggaatagatatagcaaacgccaatacaatgattgtccaatttgctgaacta
tttggacttgctcagctgtatcagttacgaggaagagtaggaagatcgggcagggaaggt
tttgcatacctcttctacacagataagtctttgctctcaagagttgcaacggatagactt
ggagctattgaggagcattcagagcttggccaaggtttccatgttgcagagaaagatatg
ggtatcagggggtttggaagcttgtttggtgatcaacagtctggagatgttgcaaatgtt
ggcatcgatctattctttgatatgctttttgacagcttgtcaaaggttgatcagttttgc
cttgtacctgttccttacaaagacgttgagctggatataagcatttctcctcatctctcc
tctgaatacataagttatctggaaaatcctgttgaattgctcaatgaagcagcaaaggct
gcagagaaagatctatggaccttaatacagttcacagaagatcttcgtcgacgatacgga
aaggagccccgtgatatggagttgctattgaaaaaactctatgtaagacggatggcagca
gatcttggtatcagtcggatatatccatctggcaaaacaatattcatgaaaacaaacatg
aacaagaaggtatttaggctcatgacagaagcgatgacttctgaaacacatcggaattcc
ctattgtttgttggaaaagagattaaggctgaactactcgtcagtttaccagacactcta
cttctgaactggcttttccattgcttagcagactgctatgctgtagtaccagcccttgtg
aagtactag
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