KEGG   Panicum virgatum (switchgrass): 120644620
Entry
120644620         CDS       T07260                                 
Name
(RefSeq) importin-13-like
  KO
K15436  transportin-3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03013  Nucleocytoplasmic transport
pvir03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    120644620
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    120644620
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pvir03016]
    120644620
Transfer RNA biogenesis [BR:pvir03016]
 Eukaryotic type
  tRNA transport factors
   tRNA import factors
    120644620
SSDB
Motif
Pfam: Xpo1 TPR_TNPO3_IPO13_2nd TPR_TNPO3_IPO13_4th UME SP2_M
Other DBs
NCBI-GeneID: 120644620
NCBI-ProteinID: XP_039777205
LinkDB
Position
8K:complement(39610116..39627831)
AA seq 1013 aa
MDAGEASELQARLAAAVHALNHDANPSARLAANQWLLALQRSPQGWAVATALLAAPDPPP
PADLLFFAAQMLRRKIQSPGPALPGAAGLAPQLLDALLLAARRFCAAPAPRQLLTQICLA
LSALALRAEGGVDGLFARMPHLPAPAVLELLTVLPEEAAQDQAGDTGVDAAARCRFTREL
LAHAPAVLDFLHSQSEKVPADDDGVPLHERNRRILRCLLSWVRVGCFSETPATTLATHPL
LTFAFNSLQVPFSFDVAIEVMTELVSQHQELPEAFLSKMPYIREVLLLPALANRNEKIIA
GLACLMCEVGQAAPALVAEGGSQALALADALLRCVAFISEDWEIADSTLQFWCSLAHFIL
GSDVKTAKRNASQVLFLPVFSSLLDALLFRAQINTDEHGTDGAPCIPDGLAQFRMNLEEL
LVDICLLLGAPAYINKLFSRGWDFSSQSVPWKEVEVRMYALSMVADTILQDESPFDFSMI
MHFVNILSSRTPVELNGSLFMVYKSFGDVIGSYSKWLSSSQSNIKPLLLFCASGISKSVS
SNACSLALRKLCEDASSFILEPQNLEILFWISEGMDKGNLRLEDEEEIVSAITHALSSVH
DKELRKSSLARLLCSSYSAVEKIIDIDRDNSLRQNPATYTQSLDLAVRGLYRMSALFGHL
STPITSGLVDDDIILVLLGIFWPLLEKLFRSSHMENVSLSAAVCRSLSSAIHSCGQHFHV
LLPKVLECLSANFLRFQRHDCFLRTSAKVIEEFGHNEEFGALFVRTFETFSSASSISTLN
SSYTCDQEPDLVEAYTCFTSMFIRCCPKEAILASSSLLELSFQKAAICLTAMHRGAALAA
MSYMSCFLEVVLAAVLQSPECIPNGSPGVALIQILARCGEGLLSNVLYALLGVSALSRVH
KSATILQQLAALCSFCERTTWKALLNWSSLCGWLQSTVKSLSSEYLKQGEAEIIIPLWLK
VLEDAGSDYLHSRTGDNIRNRQEYMQGKGGRTLKRIIRDFAESHRNAPTSCPS
NT seq 3042 nt   +upstreamnt  +downstreamnt
atggacgccggcgaggcgtcggagctccaggcgcggctggccgcggccgtgcacgcgctc
aaccacgacgcgaacccctcggcgcgcctcgccgccaaccagtggctcctcgcgctgcag
cgctccccgcaggggtgggcggtggccaccgcgctcctggccgccccggacccgcccccg
cccgccgacctcctcttcttcgccgcccagatgctccgccggaagatccagtcccccggc
cccgcgctccccggggccgccggcctggcgccgcagctgctcgacgcgctgctcctcgcc
gcgcggcggttctgcgccgccccggccccgcgccagctgctcacgcagatctgcctggcc
ctctccgcgctcgcgctccgcgccgagggcggcgtcgacggcctcttcgcgcggatgccg
cacctgccggcgcccgcggtgctggagctgcttaccgtgctccccgaggaggccgcgcaa
gaccaagccggcgacacgggggtcgacgccgccgcgcgctgccgcttcacgcgcgagctg
ctcgcccacgcgcccgcggtgctcgatttcctccactctcagtcggagaaggtgcctgca
gacgacgacggggtgcccctccacgagcgcaaccgcagaatccttcggtgcctactgagc
tgggtccgcgtgggatgcttctcggagacgccagccaccacgcttgccacgcacccgctt
ctcacgttcgcgttcaactcgctgcaggtgcccttctcgtttgatgtggccatagaggtt
atgactgagcttgttagccagcaccaagagttacctgaggcctttctaagtaagatgcct
tatataagggaagttcttctcctaccggctctagccaacagaaatgagaagatcattgct
ggtcttgcttgtttgatgtgcgaagttggccaagcagcacctgctttggttgcagaaggg
ggtagccaagcacttgctctcgccgatgcacttttgagatgtgttgcttttattagtgaa
gattgggaaattgcagattcaaccttgcaattttggtgcagtttggcacattttattctt
ggttctgatgtaaagacagccaaaagaaatgcatcacaagtgttgtttttgcctgtgttt
tcatcgctgctggacgctcttttatttcgtgctcagattaacactgatgagcatggtact
gatggagcaccttgcatacctgatggactagcacagttcagaatgaatttggaggaactc
ctagttgatatctgtttgcttctaggtgcccctgcatatataaacaagctcttttctcgt
ggatgggacttctcaagccaatcagttccttggaaggaggtagaagttaggatgtatgca
cttagcatggttgctgacacaattttacaagatgaaagtccatttgatttttcgatgata
atgcattttgtgaacattctgtccagtagaactccagttgaactgaatggaagtctgttc
atggtatacaaatcttttggtgatgtaattggttcttactcaaagtggctatcgtcttct
caaagtaacattaaacccttactcctattttgcgcatcaggaatttcaaaatctgtatca
tcaaatgcttgctccttagccttgcgcaaactttgtgaggatgcttcttcattcatcctt
gaacctcagaatcttgaaattcttttctggattagtgagggcatggataaagggaacctg
aggctagaggatgaggaagagatagttagtgcaattacgcatgctttaagttctgttcat
gataaagagttgaggaaaagttcactggccaggttactttgttccagctactcagcagtg
gaaaagattattgacatagacagagataactcactaaggcaaaatccagctacttataca
caatccttggaccttgctgtccgtggtctttacaggatgagtgctctgtttggtcatttg
tctacaccaattacatctggcctggttgacgatgatataattttagttcttcttggaata
ttttggccacttcttgaaaagcttttccgatcttctcatatggagaatgttagtttatct
gcagctgtatgccgttctctttcttcagctatacattcttgtggacagcactttcatgtc
ttgttacctaaagttctggaatgcttatctgccaatttcttgcggtttcaaaggcatgac
tgcttcttgagaacatctgccaaagttattgaagaatttggtcacaatgaagaatttggg
gctttatttgttaggacttttgaaacatttagctctgcgtcatcaatatcgactcttaat
tcttcttatacgtgtgatcaagaacctgatctagttgaagcctatacctgctttacatct
atgtttatccgctgctgtccaaaggaagccattctcgcatctagctcgctgcttgagcta
tcgtttcaaaaggcagctatatgccttacagcaatgcaccgaggagcagcacttgcagca
atgtcatatatgtcatgttttcttgaggttgttcttgctgctgtgctacaatctccagag
tgcatccctaatggatcacctggtgtggccctaattcaaatcttggctcgctgtggtgaa
ggtctattgtctaatgtactttatgctctacttggtgtatcagccttgtcaagggtgcat
aaatctgccacaatattgcaacaactggcggcattgtgcagtttctgtgagagaacgaca
tggaaggctcttcttaattggagttctctttgtggatggctacaatcaacggtaaaatca
ttgtcctcagagtatctaaagcaaggggaagctgaaataataattccattatggctgaag
gtgctcgaggatgcaggttctgactatcttcacagtaggactggtgataatatcagaaat
cgtcaagaatacatgcaagggaagggtggtagaacacttaaacgcataatcagggatttc
gccgaaagccatcgaaatgccccaacctcttgtccttcatga

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