Panicum virgatum (switchgrass): 120644706
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Entry
120644706 CDS
T07260
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03030
DNA replication
pvir03410
Base excision repair
pvir03420
Nucleotide excision repair
pvir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120644706
03410 Base excision repair
120644706
03420 Nucleotide excision repair
120644706
03430 Mismatch repair
120644706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120644706
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120644706
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
120644706
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
120644706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
Rad17
AAA_30
AAA_22
RCF1-5-like_lid
AAA_19
RuvB_N
AAA_assoc_2
AAA_17
AAA_5
nSTAND3
PTCB-BRCT
AAA_16
BRCT_2
Gp44_lid
AAA_24
AAA_18
RsgA_GTPase
Sigma54_activ_2
AAA_2
AAA_14
NTPase_1
RNA_helicase
Mg_chelatase
AAA_33
ABC_tran
Zeta_toxin
TsaE
Motif
Other DBs
NCBI-GeneID:
120644706
NCBI-ProteinID:
XP_039777324
LinkDB
All DBs
Position
8K:41398131..41407458
Genome browser
AA seq
986 aa
AA seq
DB search
MSSDIRKWFMKTQDKGAASSGAAKPSGAAAAEKKKPVLSIPEKKPAPPSLASCDQDPYAR
RKTSKYFGSKAEKDSDVEMADAAAGKSTDKSAAKRKLQKGSNELKDDNKPLPAKKMSNDD
EDDDDDFVAPSKKKTPVKPPPSKKPKVEAPGRTTGTDDAEEDDKMDEDAKTPSKGAGRGR
GRGGRRGGAAPGGRGRGGGGRGFMNFGERKDPPHKGEKEVPEGAPDCLSGLTFVISGTLD
SLEREEATDLIKRYGGRVTGSISKKTSYLLADEDIGGVKSNKAKDLGVPFLTEDGLFDLI
RKSKPAKAPVDKQQSNNGSEKLQKSQTKSSPARVDKRAEASAVDKSIASKTNVTSASAEN
QKAKKIDRGSMQWTEKYRPKVPNDIVGNQSMVKQLHDWLKSWDTHFLHSGQKGKGKKPVD
SGAKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNSI
KELISNATLNYGDNRSKRPKAVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDR
YSQKLKSLVNYCLMLNFRKPTKLQMGKRLMEIAKKEGIQAQENAMEELAERVHGDIRMAL
NHLQYMSLSQSVVKYDDIRVRLNSSAKDEDVSPFTAVDKLFGFNGGRLRMDERIDYGMSD
PDLVPLIIQENYINYRPNTIGKDESGVKRMNALARAAESIADGDLVNVQIRRYRQWQLSQ
AACFASSIVPAALMHGNREVLEAGERNFNRFGGWLGKYSTTNKNIRLLEDVHSHILASQQ
ANLDRGTLRLDYFTLLLRQLTDPLKTIAKDEAVQKVVEFMDTYSLSQEDFDTIVEISKFK
GHPSPMDGIQPAVKSALTKAYKQGSSSRVIRAADLINIPGMKKPLKKRVAAILEPVEESL
PDENGVASAEAGEEDSSDAENNDELLPGNSTPKLDLKSDKKKGIQVQLDLKSKGNNSGGK
KTPATRSRGPGSGGKAAGSSAGKRKR
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggacatccggaaatggttcatgaagacgcaggacaagggcgcggcctcctcc
ggggccgcgaagccctccggcgcggctgcggcggagaagaagaagccggtgctcagcatt
ccggagaagaagccggcgccgccttcgttggcgtcctgcgatcaggatccttacgctaga
aggaagacaagcaagtactttggttcgaaagcagaaaaggactcggatgttgaaatggca
gatgctgctgcgggcaaaagtaccgataagagtgcggcaaaaagaaaacttcagaaaggc
agcaatgaactcaaggatgacaacaagcctttgccagcaaagaaaatgtctaatgacgac
gaagatgacgacgacgactttgtggcaccttcaaaaaagaaaactccagtgaagccaccg
ccatcaaagaagcctaaagttgaagcccctggaaggactacaggtactgatgatgctgag
gaggacgacaagatggatgaagatgccaagaccccttcgaaaggagctggaagggggagg
ggaaggggaggaagaagaggaggagcagcccctggtgggagaggtagaggagggggtggt
agaggtttcatgaattttggtgagaggaaggatcctcctcacaaaggagaaaaagaggtc
ccagagggtgcacctgactgtttatctggtctgacatttgtcataagtggtacccttgac
agtcttgaacgtgaggaagcaactgatctaattaagcgttatggagggcgtgtgactggc
tctattagtaaaaagacgagttacttattggctgatgaagatattggtggagtgaaatct
aacaaagcaaaagaccttggtgtcccattcttgaccgaagatggtttgtttgatttgata
cggaaatcaaagcctgcaaaggctcctgtagacaaacagcaaagcaacaacggttctgaa
aagctgcagaaatcacagacaaagagctctccagctagagttgataaacgagctgaagca
agtgctgtggacaaaagtattgcttcaaagactaatgtcacaagtgcctctgctgagaac
caaaaggccaagaaaattgaccgtggttctatgcaatggacagaaaaatatcggccgaag
gttccgaatgacatagttggcaaccaatcaatggtcaaacaacttcatgattggttgaaa
agttgggacacacatttccttcattctggccaaaagggtaagggaaagaagccagttgat
agtggagccaaaaaagctgtgttgttgagtggacctcctggtattggtaaaactacaact
gcaaaagttgttagtcagatgcttggattgcaggccattgaggtaaatgcaagtgatagc
cgtggtaaagcagactccaagatcgagaaaggtgttggggggagcacatcaaattctatc
aaagagcttatcagtaatgcgactctgaattatggtgacaatcggtcaaaacgccctaaa
gctgtactaatcatggatgaagttgacggtatgtcagctggagatagaggtggtgttgct
gatcttattgctagcatcaagatatccaagattcctataatctgcatctgtaacgaccgt
tatagccagaaattgaagagtcttgtcaattactgcctgatgctcaacttcagaaaacca
acaaaactacagatgggtaagagattgatggaaattgcgaaaaaggaaggtattcaagct
caagagaatgccatggaagagcttgctgaaagagttcatggggatattcgcatggcactt
aaccatttgcagtatatgagcctctcccaatctgtggtcaaatatgatgatatacgagtg
cggcttaatagcagtgcaaaggatgaagatgtttctccttttaccgctgttgacaaactg
tttggtttcaatggtgggagattacggatggatgagagaattgattacggcatgagtgat
cctgatttagttcccctgattatccaggaaaattatatcaattatcggcccaacaccatt
gggaaggatgaaagtggagttaaaagaatgaatgctcttgcccgtgctgctgagtctata
gcggacggtgatcttgttaatgtacaaataagaagatatcgacagtggcagttatcacaa
gctgcttgctttgcttcatctatagtacccgctgctttgatgcatgggaatagagaagtc
cttgaagcaggagagcgaaactttaataggtttggtgggtggttgggcaagtactcgacg
actaacaaaaacataaggctactggaagatgttcacagccatattcttgcgtcccagcaa
gcaaacttggacagggggacattgcggttggattattttactcttctcttgagacagctg
actgacccactgaaaacaattgcaaaggatgaagctgttcaaaaggtggtggagttcatg
gatacctactctctaagccaggaagactttgacacgattgtggaaatatccaaatttaag
ggtcatccaagtcctatggatgggattcaacctgctgttaaaagtgccttgacaaaggca
tacaaacaaggaagcagttctcgtgtaattcgagcagcagatctaataaatattcctggc
atgaagaagcctttaaagaaacgagtggcagcaatcttggagccagtagaagagagcctg
cctgatgaaaatggagtagcatctgctgaagctggcgaagaggattcttctgatgctgaa
aataatgatgaacttttgcctggcaactcaacgccaaaactggatctgaagagtgataag
aagaaaggaattcaagtccagctcgacctcaagagcaagggaaacaactccggcgggaag
aagacacctgccaccagatcaagagggcctgggtccggtggaaaggccgcgggaagctcc
gctgggaagaggaagaggtaa
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