Panicum virgatum (switchgrass): 120644712
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Entry
120644712 CDS
T07260
Name
(RefSeq) prolycopene isomerase, chloroplastic-like
KO
K09835
prolycopene isomerase [EC:
5.2.1.13
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00906
Carotenoid biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
120644712
Enzymes [BR:
pvir01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.13 prolycopene isomerase
120644712
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Motif
Pfam:
Amino_oxidase
NAD_binding_8
DAO
FAD_binding_2
FAD_oxidored
HI0933_like
Thi4
GIDA
Pyr_redox_2
FAD_binding_3
GMC_oxred_N
Motif
Other DBs
NCBI-GeneID:
120644712
NCBI-ProteinID:
XP_039777330
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Position
8K:41443108..41448457
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AA seq
583 aa
AA seq
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MPPLAARVHAPLLLAPAARPAARLRASSGPRGGGGVRRGALASEKPAAVAVAEKAGGDGG
GGEGPYDAIVVGSGIGGLVAATQLAAKGARVLVLEKYLIPGGSSGYYRRDGFTFDVGSSV
MFGFSDKGNLNLITQALEAVGRKMEVLPDPSTVHFHLPGDLSVLVHRKYEDFINELISKF
PHEKEGILKFYGICWKIFNSLNSLELKSLEEPLYLFGQFFQKPLECLTLAYYLPQNAGDI
ARKFIKDQALLSFIDAECFIVSTVNALQTPMINASMVLCDRHFGGINYPVGGVGGIATSL
ADGLVEKGSEIRYKANVTNVILENGKAIGVRLSNGKEFFAKTVISNATRWDTFGKLLKDK
ELPEEEKNFQKNYVKAPSFLSIHMGVKASVLPAGTDCHHFVLEDDWNNLEKPYGSIFLSI
PTVLDPSLAPEGHHILHIFTTAGIEDWEGLSRKEYEEKKEVVANGIIRRLEKELFPGLED
SIVLKEVGSPKTHRRFLARNDGTYGPMPRGKPKGLLAMPFNTTSIDGLYCVGDSCFPGQG
VIAVAFSGIMCAHRVAADIGLEQKSPVLDAGLLGLLRWLRTLA
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgctcgccgcgcgggtccacgccccgcttctgctcgcccccgccgcccgcccg
gccgcgcgcctccgggcctcgagcgggccccgcggcggcggcggcgtgaggaggggcgcg
ctggcctcggagaagccggcggcggtggcggtcgcggagaaggcgggcggggacggggga
gggggcgagggcccgtacgacgcgatcgtggtggggtcggggatcggcgggctggtggcg
gcgacgcagctggcggccaagggcgcgcgggtgctggtcctcgagaagtacctcatcccg
gggggaagctccgggtactaccgccgcgacgggttcaccttcgacgtcggctcctccgtc
atgttcggcttctccgacaagggtaacttgaatttgatcacacaagcactggaagcagtt
gggcgtaagatggaagtcctgcctgacccttctacggtccatttccacctacctggggac
ctctctgttcttgtgcatagaaagtatgaagacttcatcaatgaactgatcagcaaattc
cctcatgagaaggaagggatccttaagttctacggcatatgttggaagatcttcaattca
ttaaattcattggagctgaagtccctggaggagccactttatctttttgggcaatttttc
cagaagcctctagaatgcttaactctagcttattatttgccgcagaatgctggggatatc
gctcgcaagttcataaaagatcaggcgctactctccttcatagatgccgagtgtttcatt
gtgagcacagtcaatgccttgcaaacgcccatgataaatgcaagcatggtattgtgcgat
aggcactttggggggattaattatccagttggtggcgttggtggtattgcgacatccctg
gcagatggccttgttgaaaagggcagcgaaatccgttacaaggctaatgtaaccaatgtc
attcttgaaaatgggaaagctattggtgtgaggttatcaaacgggaaggagttctttgct
aaaacggtgatatcaaatgccacaagatgggacacttttggaaagctcttgaaagacaaa
gagcttccagaagaggagaaaaacttccaaaagaattatgttaaggcgccatcattcctt
tcaattcatatgggtgtcaaagcctcagtcttgcccgctggcactgactgccaccatttt
gtacttgaggatgattggaataatttggagaaaccttatggaagcatatttcttagtatc
cctacagttcttgatccatcattagctcctgaaggacatcatatacttcatatatttact
accgcaggcatagaagactgggagggtctttcaaggaaggaatatgaagagaaaaaagag
gtagtggccaatgggattatcagaaggcttgaaaaggagttgtttcctggtcttgaagat
tcaatagtcctcaaagaggtaggctcaccaaaaactcaccgaagatttcttgctcgaaat
gatggtacatatggaccgatgccacggggtaaaccaaagggcttgctggcaatgcctttc
aacactacttcaatagatggcctttactgtgttggcgatagctgttttcccgggcaaggt
gtcattgccgtagcattctcagggatcatgtgtgctcaccgagttgctgcagatattgga
ctagagcaaaaatctcctgttctagatgctggtcttcttgggctcctcagatggttgaga
acacttgcatag
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