KEGG   Panicum virgatum (switchgrass): 120644935
Entry
120644935         CDS       T07260                                 
Name
(RefSeq) SEC12-like protein 2
  KO
K14003  prolactin regulatory element-binding protein
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    120644935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120644935
Membrane trafficking [BR:pvir04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    120644935
SSDB
Motif
Pfam: Beta-prop_EML_2 WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_EML EIF3I WD40_MABP1-WDR62_1st Beta-prop_HPS5 Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_IFT140_1st KNTC1_N Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 RMC1_N Beta-prop_Vps41 PEP5_VPS11_N DUF7165 CFAP43_N Beta-prop_VPS8 Nbas_N Beta-prop_ELP1_1st
Other DBs
NCBI-GeneID: 120644935
NCBI-ProteinID: XP_039777613
LinkDB
Position
8K:complement(47571682..47575615)
AA seq 389 aa
MAPRGGQSYGFPIYCAAWLPLAHILKPDPPAADADADASPSSPPPPMAALGGGGGEGRSG
VPNKLVVAALGPAGEEAALSPEAVVEVKTKEEVPYRMAVHPRGDGVLCAFPNGCRLYRWE
SQEGDEPRKLALEPDQEALTDLKDAGLQLAVSFSGEGSILVTGGEDGHLRVFKWPAMESV
LTEADTKTSIKDLSFSSDEKFLAVNRSSGPCRVWDLLSSEVVANLPREAGEIFGFCRFSN
KIDSSNILFITAMQGDYGKIISWNTTSWTRVGSKKITREAISAFAVSPDGALLAIGTIEG
TIIVLASKDMRTLITVKKAHLGIVTTLAFSQDSRTLLSTSFDSTARVTSVGSPKSNGTGV
WPMLLVIILAILVYYCMQHKEELLAMLQR
NT seq 1170 nt   +upstreamnt  +downstreamnt
atggcgccccgcggcggccagtcctacgggttcccgatctactgcgcggcctggttgccc
ctcgcccacatcctcaaacccgacccgcccgccgccgacgcggacgcggacgcctccccc
tcctctccaccgcccccgatggcagcgctcggcggcggcggcggggagggccggagcggc
gtgcccaacaagctcgtcgtggccgcgctgggcccggcgggggaagaggcggccctctcc
cccgaggcggtggtcgaggtgaagaccaaggaggaggtgccgtacaggatggccgtccac
ccgcgcggcgacggcgtgctctgcgccttccccaacggatgcaggttgtatcgatgggaa
tcacaggaaggagatgaaccacgtaagctagctttggagcctgaccaggaagcattaaca
gatctaaaagatgctggtttgcaattggccgtatcattcagtggagaaggttcaatactt
gtgaccggtggtgaggatggacatttaagggtcttcaaatggcctgccatggagtctgtt
cttacagaagctgatactaaaacatcaattaaggatcttagtttcagttccgatgagaag
tttcttgctgtgaataggagcagtggcccatgtagagtgtgggatttgctgtcatctgaa
gttgtagctaatttgccaagagaagcaggagaaatattcggattctgcagattctctaat
aagattgacagcagtaacatcttatttataacagcaatgcaaggtgattatgggaaaata
atatcttggaatactacctcatggacaagagttggatcaaagaaaataactcgtgaggct
atttcagctttcgctgtgtcgcctgatggtgctcttcttgcaattggaacaattgaagga
accattattgtactagcgtcaaaagatatgcgaacactcattacagttaaaaaggctcat
cttggcattgtaactacgctcgccttctcccaggattccagaacattgctgtcgacttcc
tttgactcaactgcaagggtgacatcagttgggtccccaaagagtaatggtacaggtgtg
tggcccatgctactagttatcattctagcaattttggtatactactgtatgcagcacaag
gaagagcttttggcaatgttgcagcgttga

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