Panicum virgatum (switchgrass): 120644976
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Entry
120644976 CDS
T07260
Name
(RefSeq) oligouridylate-binding protein 1B-like
KO
K13201
nucleolysin TIA-1/TIAR
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120644976
03041 Spliceosome [BR:
pvir03041
]
120644976
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
120644976
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
120644976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_PARP14_3
RRM_5
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
120644976
NCBI-ProteinID:
XP_039777648
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All DBs
Position
8K:complement(48340266..48345491)
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AA seq
444 aa
AA seq
DB search
MHQQRMKQAAAAAAAQQQQQLMQQALLLQQQQQQQQQPPLFPGHHPHPGLLAAPQIEPIV
SGNLPPGFDSSTCRSVYIGNIHLQVTDTLLQEVFQSIGPVEGCKLIRKEKSSFGFIDYYD
RRSAALAILSLNGKPLYGQPIKVNWAYTSTQREDTSGHFNIFVGDLCPEITDAALFAFFS
GYSTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQNAINDLNGKWLGNRQIRCNWATKGAN
AGDEKQSVDTKVDQINGSSEAGKENSNEDGPENNPLFTTVYVGGLPHEATNNDVHLFFHS
LGAGSIEEVRVTRDKGFGFVRYSTHEEAALAIQMGNGQLIGGRPIRCSWGNKPTPPGTAS
SPLPPPAPSPFPTGVSATDFLAYQRLALSKIAANPALMGQHALKQAALGMDAGASQVIYD
GGYPGINAAAAAQQQQQQQQLMYF
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgcaccagcagcggatgaagcaggccgcggcggcggcggcggcgcagcagcagcagcag
ctgatgcagcaggcgctgctcctgcagcagcagcagcagcagcagcagcagccgcccttg
ttccccgggcaccacccgcaccccggtctcctcgccgcgccgcagatagagcccatagtt
agcggaaaccttcctcctgggtttgattcaagtacatgccgcagcgtgtatattggcaat
atccatcttcaagtgacggacacgttactgcaggaagtcttccaaagtattggtccagta
gaaggttgcaagctcatcagaaaagaaaagtcgtcttttggtttcattgactactatgac
cgccgatctgctgcactagcaattttatctctcaacggcaaaccactgtatggtcagcca
ataaaagtcaattgggcatatacaagtactcagagggaggatacatcaggccattttaat
atttttgttggggatctttgcccagaaatcactgatgctgctctatttgcctttttttct
ggatactctacctgctcagatgctagggttatgtgggaccagaaaacaggacgatccaga
gggttcggttttgtttctttcaggaatcagcaggatgctcaaaatgcgataaatgacttg
aatgggaagtggcttggcaaccgtcaaattcgttgcaattgggcgacgaaaggtgctaat
gctggtgatgaaaaacaaagtgtggacaccaaggtggaccagataaatggttcatcagaa
gctggaaaggagaattcaaatgaagatggtcctgaaaataacccactttttaccactgtt
tatgttggtggtcttcctcatgaggccaccaacaatgatgtgcacctgttttttcattca
cttggggctggctcaatcgaggaggtccgtgtaacacgtgacaagggctttggctttgtg
aggtacagcacccatgaggaagctgcactggcaattcagatgggcaatggccaactgatt
ggcgggaggccaataaggtgctcctggggaaacaagccaactccaccagggacagcatct
tcgccgctcccccctccagcaccgtctccattccccaccggcgtgtcggcaactgacttc
cttgcctaccagcgcctggccctgagcaagattgccgcgaacccagccctaatgggccag
cacgccctgaagcaggctgcactggggatggacgccggggccagccaggttatctatgac
ggcggctaccctggcatcaacgctgcagctgcagctcagcagcagcagcagcaacagcag
ctcatgtacttctag
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