Panicum virgatum (switchgrass): 120645050
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Entry
120645050 CDS
T07260
Name
(RefSeq) serine/threonine-protein kinase VPS15-like isoform X1
KO
K08333
phosphoinositide-3-kinase, regulatory subunit 4 [EC:
2.7.11.1
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
120645050
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pvir01001
]
120645050
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120645050
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
120645050
Protein kinases [BR:
pvir01001
]
Serine/threonine kinases: Other
VPS15 family
120645050
Membrane trafficking [BR:
pvir04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
120645050
Autophagy
Autophagosome formation proteins
PI3K complex
120645050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS15-like_hel
WD40
Pkinase
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WDR55
WD40_CDC20-Fz
HEAT
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_2nd
WDR90_beta-prop_4th
PK_Tyr_Ser-Thr
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Kinase-like
Beta-prop_HPS5
PEP5_VPS11_N
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_CAF1B_HIR1
Tti2
Beta-prop_WDR36-Utp21_1st
APH
Beta-prop_WDR41
TCAD9
Motif
Other DBs
NCBI-GeneID:
120645050
NCBI-ProteinID:
XP_039777734
LinkDB
All DBs
Position
1K:complement(54576813..54585846)
Genome browser
AA seq
1469 aa
AA seq
DB search
MGNKIARTTQASATEYYLHDLPSTYNLVLLDVVSRGRCLKSVRCKHDEGLLLVKVYFKRA
GEPIDLKEHERRLERIRNALKGIEGSHVWPFQVWLQTDKAAYLLRQYFFNNLHDRLSTRP
FLSQIAKKWLAFQLIHAVEQSHSKGVCHGDIKCENVLVTSWNWLYLTDFASFKPTYIPLD
DPSDYSFYFDTGGRRRCYLAPERFYEHGGESQVAADAPLQPSMDIFSLGCVVAELFLNGQ
PLFEYSQLLSYRRGQYDPTNALEKIQDSGIRDMILHMIQLDPKKRLPCRSYLQKYESVVF
PFYFSNFLHKFFADIVPLDSDARVEKTQDNFEKILEMMMGSSTIEQIERSTSSQHTEPSG
RKGMGRKILNLPGDSKKNTSVVKKHTPVDHQHIAGDINFLLKEVENRTNSTSTMVTKDMD
HIRPLQLVNPAGRGTISGLMAQNNVVSHVQKISKSNLYSLVASYDGQSDAYSFDIFQQTD
SKVSCEGMVLLASLLCSCIRSVKKSELRRASLILLKFSSTYIDDDSRLQLVVPYVIAMLS
DPAAIVRCTALETLCDVLCLVQDFPISDAAIFPEYILPMLSLLPDDTEESVRVCYASNIH
KLALTAYRFLLRSRSIADIGPLDESVVAPISQSADSPVKKQDKIYGQLAELRKNIYEIVQ
DLAMGQKQTPNVRRALLQDIGYLCYFFGHKQSNDFLLPILPAFLNDHDEQLRAVFFGQIV
FVCYFIGSRSVEEYLLPYLEQALSDGMEAVLVNALDCLTMMCKSGYLRKRVIVGLLGKAL
PLLRYPINWVKRSALRFVAACSESLGAVDTYVHLTPHLRQFLHRESPSLSSETALLSCLK
SPLPKSIFYEALEDAQDMGDILLKGGGKKELIVHGGKYPGKVQSGSSMNFEDVARLKGPN
VLSNISLDIKDSVSPDKSLYSGFALHASAGNSSFYDGLSKGIPSYSVCTDKRGLGETHVV
PDSSVYKASIRLPWLEPNRPGVQTRDDYFSSKRRDLSINDSMKSSSSLQGDSIPKSDTGG
LPSFSRSAMNLETGWKPRGILVAHLQEHRSSVNDIAVSNDNTFFVTASDDSSVKIWDTRR
LEKDIAFRSRLTYSMGTSRALCTTMVHGTSQIVVGACDGTLHLFSVDCARSAGSVVERYS
GIVDVKRNDIKEGAILSVVNCSSDSFSPTILFSTEHCGIHKWDTRTNSESWSFKSSPKEG
YISALVVGQCGNWFISGSSRGVLTLWDNRFLLPVNSWHYSTISPIEKLCLLIPPPSSLSS
GRPLVFVAAGCNEVSLWNAENGSCHQVFRTASTENEAVMPKAPSRTLNKPSTKDVRRSGN
YKYRIDELNDPPVRHPGIRSLLPLPGGDLLTGGTDLKIRYWDQARPEQSFCIAGPSAKEV
RSAKGDILEKAVGNDECYDIRSSFGVQVVQEMYKQTTAVSGLTPKTQLAVAAADSAGCHR
DAILALASFNLSSQRLISASRDGVVKVWK
NT seq
4410 nt
NT seq
+upstream
nt +downstream
nt
atggggaataagatcgcgcggacgacgcaggcgtcggcgacggagtactacctccacgac
ctgccgtccacctacaacctcgtgctcctcgatgtcgtcagccgcggccgctgcctcaag
tccgtccgctgcaagcacgacgaggggctgctcctcgtcaaggtctacttcaagcgcgcc
ggcgagcccatcgacctcaaggagcacgagcggaggctggagcggattaggaacgcgctc
aaggggatcgagggctcccacgtatggcccttccaggtttggctacaaacagataaggcg
gcatatctcctgagacagtacttcttcaacaacctgcacgatcgactgagtacacgccct
ttcctcagtcagattgcgaagaaatggcttgcttttcagttaatccatgcagtggagcag
agccatagtaagggagtttgccatggtgacataaaatgtgagaatgtgctcgttacttct
tggaattggctatatctcacggactttgcatctttcaagccaacttatattccacttgat
gacccatctgattattcattctactttgacactggaggaaggcgaaggtgctatctggca
cctgaaagattctatgaacatggtggggagtcccaagttgcagcagatgcacctctgcag
ccatctatggatatattttctctcgggtgcgttgttgctgaacttttccttaacggccag
ccactttttgagtattcacaacttctgtcttatcggcgtggtcagtatgaccccacaaat
gctctagaaaagatacaagattccggtattcgtgacatgatacttcacatgatccagttg
gatcccaaaaaaaggctaccatgtcgaagctatctgcaaaaatatgaatctgttgtgttc
ccattttatttttcgaactttctgcacaagttcttcgcagatattgttccacttgactca
gatgccagggttgagaagactcaagacaattttgaaaagatacttgaaatgatgatgggc
agctcaacaattgaacaaattgagagatccacatcgtctcagcatactgaaccatctggg
agaaaaggcatgggaaggaaaattttaaacttaccaggagattctaaaaaaaacacatct
gtagttaagaaacatacacctgtagaccatcaacatattgctggagatatcaatttcctc
ctcaaagaagtggagaacaggaccaatagcacaagcacaatggtcacaaaagacatggac
catattaggcccttgcagctagttaatccagcaggaaggggaactataagtggtttgatg
gcccagaataatgttgtatcccatgtgcagaagatctcaaagagtaatttatactccttg
gtagctagttatgatggccaatcagatgcctatagctttgacatttttcaacagacagac
tccaaggtgagctgtgaaggcatggtcttacttgcctcattactctgctcgtgcatacgc
agtgtgaaaaaatctgagctaagaagggccagtctcattcttctgaagttttcgtccaca
tacattgatgatgacagtcgcttacagctagtggttccctatgtgattgcgatgctttca
gatccagctgccattgtccgctgcactgctttggaaaccttatgtgatgttctttgtctt
gttcaagacttccctatcagtgatgcagctatattccctgagtacatcctcccaatgctc
tctttgctccctgatgatacagaggagagtgttagagtttgctatgctagcaatattcat
aagctggctttaacagcttataggttcctacttcgttctcgtagcatagctgatattgga
cctctggatgaatcagtggtagctcccatatcacagtctgcagattcaccagtgaagaag
caagataaaatttatggccaacttgcagaactgaggaaaaatatttatgaaatagtgcaa
gatttggcaatgggtcaaaagcagacacctaatgtccgcagagctcttctgcaggatata
ggttatttatgttacttctttgggcacaagcaaagtaacgattttcttcttcctatactt
ccagcatttctgaatgaccatgatgagcagctccgtgcagttttctttggccaaattgtc
tttgtttgctatttcattggttcaaggagcgttgaggaatatcttttgccatatcttgaa
caggcactaagtgatggtatggaggctgttcttgtaaatgcacttgattgcttgactatg
atgtgcaaaagtggttatttgaggaaaagagtaattgttggtctattgggaaaggctctc
cccctacttcggtatccaatcaattgggttaaacggtctgctttaagatttgttgctgct
tgcagtgagagcttaggggctgttgatacttatgtgcaccttactcctcatctaaggcag
ttcctacacagggagtcaccttcattgtcttctgaaactgctcttctttcatgccttaag
tctcctctgcccaaatcaatcttctacgaagctttagaggatgctcaggacatgggcgac
attttactgaagggtggtggcaagaaagaactgatagtacatggtggaaaataccctggt
aaagtacaaagtggatcctcaatgaattttgaagatgttgcacgattgaaaggccctaat
gttttgagcaatatatctttggatatcaaagattcagtttctcctgacaaatcgttatat
tctggttttgcattacatgcatctgctgggaatagttccttttatgacggcttatctaaa
ggaataccatcatattctgtttgtactgataagcgaggtttaggagaaacacatgtggtc
cctgattcttcggtgtataaagcatcaataaggttaccttggttggaacccaaccgccca
ggcgtgcagactagagatgattatttcagtagcaagcgtcgagatttaagcatcaatgat
tctatgaagagcagttcatctttgcaaggggatagcattccaaaatctgatactggagga
ttgccgtccttttccagatcagcaatgaacctggaaactggatggaagcctcgtggaatt
ctagtggcacatctccaggagcatcgctcgtctgtcaacgatattgccgtgtcaaatgat
aataccttttttgtgaccgcgtctgatgactcaagtgtcaagatatgggatacaagaaga
ttggaaaaggacattgccttcagatctaggttaacgtacagcatgggtactagccgagct
ctatgtacgacaatggttcatggtacttcacagattgttgtcggtgcatgcgatggaaca
ctgcacttgttttctgttgattgtgcacgcagcgctgggagtgttgtggaaaggtattct
ggtattgttgatgtaaaaaggaatgatattaaagaaggcgcaattctcagtgttgtgaat
tgttcaagcgacagctttagcccaactatccttttcagcaccgagcattgtggcatccat
aaatgggatacaaggaccaactcagaatcctggtcatttaaatcatcacccaaggagggg
tatatatcggcccttgttgtgggccagtgtggaaattggttcatctcaggttcttcaaga
ggtgtccttacactgtgggataataggtttttgctgcctgttaactcgtggcactattca
acaataagccctatagagaaattgtgcttgcttatacctccaccaagctctttatcttct
ggaaggccattggtttttgttgccgccggctgcaacgaagtttccctatggaatgctgag
aatggaagctgtcaccaggtatttagaacggcaagcactgagaatgaagctgtgatgcca
aaggcaccatcaagaacacttaacaagccaagcaccaaagatgtaagacgatcaggcaat
tataagtacagaatcgatgaattgaacgacccacctgtacgccatccaggcatacgttct
ttgcttcccttacctggcggtgatctattgactggaggaacagacttgaaaattcgttac
tgggatcaagccagacctgagcaaagcttttgtattgctggtccctcggccaaagaagtc
cgttcagcaaaaggagatattttggagaaagcagttggaaacgatgagtgttatgatata
agatccagttttggagtacaagtcgtgcaggaaatgtataaacagactaccgctgtgtcc
ggtttgacacccaagacacagctcgcggtggcagctgcagactcggccgggtgccaccgt
gacgcaatacttgctttggcatccttcaatctgtcgagccagaggttgatatcagccagc
agagatggagtcgtcaaagtatggaaatag
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integrated database retrieval system
