KEGG   Panicum virgatum (switchgrass): 120645106
Entry
120645106         CDS       T07260                                 
Name
(RefSeq) splicing factor U2af large subunit A-like isoform X1
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120645106
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120645106
Spliceosome [BR:pvir03041]
 Complex A
  U2 snRNP components
   U2 related factors
    120645106
 Complex B
    120645106
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_occluded
Other DBs
NCBI-GeneID: 120645106
NCBI-ProteinID: XP_039777791
LinkDB
Position
8K:complement(51109589..51115085)
AA seq 591 aa
MAEHDARYEGNGGPAPGDAGAHAQAEHAAGGGSPPAAGPKPTGFSDHADGRASQPQHETE
SHDSGSSKSRERDRERDKGKDRERDRDRGRERERDRDREKDRERGDKDRDRDRHHRDRRE
RSEKREHRDRSDDRDRHRDDRDRHRSHDSERRRDRDRDGHRRHRSRSRSPSKSRDRDRRS
RSRSRSRSKSKRMSGFDQAPLQPTLPIAAAGAVPGQLPGVIPPIAGMFPNLYNLGQINPL
VIQPQAMTQQATRHARRVYVGGLPPTANEQTVAIFFNGVMAAIGGNTAGPGDAVLNVYIN
HDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLASALGPSQPNPNLNLA
AVGLMPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYA
FCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGGAQPRPEQENILLQAQQQVQMQKLV
YQVGGALPTKVVCLTQVVTADELRDDEEYEDIVEDMREEGRKYGNLVKVVIPRPDPSGAP
VAGVGKVFLEYADVEGSTKAKMGMHGRKFGGNQVVAVFYPEDKFAAEQYDG
NT seq 1776 nt   +upstreamnt  +downstreamnt
atggccgagcacgacgcgcgctacgagggcaacggcggccccgcccccggggacgcgggc
gcccacgcccaggccgagcacgccgctggcgggggctccccgcccgccgcggggcccaag
cccaccgggttctccgaccacgctgacggccgcgcctcccagccccagcacgagacagag
tcgcatgacagtggttcctcaaaatcccgagaaagggacagagaacgtgataagggcaag
gacagggagcgggacagggaccgtggccgagagagggagagggaccgggacagggagaag
gaccgcgaaagaggtgacaaggacagggatcgtgatcgccaccacagggatcgccgcgag
cgcagcgagaaaagggaacaccgtgatcgatccgatgatcgtgaccgccaccgtgatgat
cgtgaccgtcacaggagccatgattctgaaaggagaagagaccgtgacagagatggccac
cgtaggcatcggtcccgctcccgctccccgtctaagagccgtgaccgtgaccgtagatct
agatctcgttcgcgctctcgttcaaagagcaagcgtatgagtggatttgatcaagcaccg
ctacaaccgacgttgcctatagctgctgctggtgctgttcctggtcagctgcctggagtc
attcctcctattgcagggatgtttccaaacttgtataatttgggacagatcaaccccctt
gttattcaaccgcaagccatgacacaacaggctactcgacatgctcggcgtgtgtatgtt
ggtggacttcctccaactgctaatgagcagactgttgccatattcttcaatggagttatg
gcagctattggaggaaacacagctggtccaggtgatgctgttctgaatgtctacataaac
catgataagaaatttgcttttgttgagatgagatctgtggaggaagcaagcaatgcaatg
gccttagacggcataatgttcgagggagcaccggtgaaggttagaaggccgacggactat
aatccttccctagcatctgcgctgggcccaagccagccaaaccccaatcttaatcttgct
gctgttggcttgatgcctggctccgctggaggattagaaggccctgatcgcatttttgtg
ggtgggctaccctattacttcactgaggcccaagtgcgggagttgctcgagtcctttggt
cctctgcggggatttgatcttgtgaaggatagggaaactggtaactcgaagggctatgca
ttctgtgtgtaccaggatctttctgttaccgacattgcctgtgctgctcttaacggcatc
aagatgggagacaagacccttactgttaggcgggcgaaccaaggaggcgctcagcctagg
ccagagcaggaaaacatcctgttgcaggcacaacaacaggtgcaaatgcagaaactcgtg
taccaagtcggaggtgcccttccaacaaaagtcgtatgcttgacacaggtagtcacagca
gatgaactgagagatgatgaggaatatgaggacattgtggaggacatgagggaagaaggg
cgcaaatacggtaacttggtgaaagttgtaatcccacggcctgaccccagcggtgctcct
gttgctggagttgggaaggtgtttttggaatatgcagatgtggagggttcgaccaaagcg
aagatgggcatgcacgggaggaagtttggcgggaaccaggtggtggctgtgttctacccc
gaggacaagttcgccgcagagcagtacgatggatga

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