Panicum virgatum (switchgrass): 120645154
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Entry
120645154 CDS
T07260
Name
(RefSeq) sister-chromatid cohesion protein 3-like
KO
K06671
cohesin complex subunit SA-1/2
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120645154
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
120645154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_SCC3-SA
SCD
STAG
Cnd1
HEAT_2
Aminotran_3
Motif
Other DBs
NCBI-GeneID:
120645154
NCBI-ProteinID:
XP_039777854
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All DBs
Position
8K:complement(52069668..52078389)
Genome browser
AA seq
1114 aa
AA seq
DB search
MEEMRRPKRGRPPKPREVDYADFMEEDDDAAGLAPPHTKRKRAASAAAAASLEDQPLIDI
IKHNGRLISHAVKKLVEDYESNKNSVIFQILAMLFEACGAKHEIYPDYLHESDVDDIVLS
LVDLARKGLVEDNYSTKQKDLKHFKENLVIFWDSLVLECQNGPLFDDTLFQKIKDYVIAL
SCTPPRVYRQVASLVGLQLVTSFISVAKILSGQRETTQRQLNAEKKKQSDGPLVESLNNR
LALTHENITYLEDLMRKIFSGLFMHRYRDVDPEIRMSCIKSLGIWVVSYPSLFLQDIYLK
YLGWTLNDKNAGVRRTSILALQSLYEVDDNIPSLGLFTERFYSRMIQLADDIDVSVAVSA
IGLIKQLLRHQLLSDDDLGPLYDLLIDEPPMIRRAIGELVYDHLIAQNIKTSQPGARDGE
NEPSEVHIGRMLQILREFSEDPVLSSYVIDDIWDDMKAMRDWRCMISVLLDENPGIELTD
MDGTNLVRMLHASAKKAVGERIIPAMDNRKLYYNKGQKETLENSKREITSAFLTRYPHLL
RKYMSDKAKISPLVDMMVLLKLEMYSFKRQETHFKAAIDLITDAFFKHGEKDALRSCIKA
ITFCCTECQADLKDYAENKLKNLEDELVLKVKTAIKEVEAGDDEYSLLVNLKRLYELQLS
KPVKNDSLFEDMYRILSHLRDMDNEVKSFLLLNMYLQVAWCLHVIDGENPSETSIDELLS
KQSSLFDQLYYYLVVLPTYQKEGRSTTVLSCRVCIITVEMWCLFKKSKYSSTRLESLGYL
PQVDMVQKFWKLCEQQLNISDETEDEDANEEYIEDTNRDAVMIAAAKLVLADTIPKDYLG
PEIVSHYASHGASTTEIIKHLITSLKKNADFDMGALFYEALRRLYERYMTQVNDGENQTL
ISKSYSECQDLAIRLARSYVGAARTKNKSEILKIIQDGVSFAFADLPNQLSFLEAALLPF
VSKLASADIPDILADVEKRTRDANMNEDQSVWRPYFTFVEHLREKHAKNEVLQEEEEKPV
KRRGRPRKVRDVPNVSDVRGKKLFKDDGNNSSDEDSISASDHHGHGEDEDSDDDANQPLI
NTIRSSAAKLRSLKVSQQGTSSRKGAAGPSGSNS
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atggaggagatgcgccgcccgaagcgcgggcgcccgccgaagccgcgggaggtggactat
gcggacttcatggaggaggacgacgacgcggccgggctcgcgccgccccacaccaagcgg
aagcgcgccgcctcggccgccgccgcggcgtctctggaggaccagccactcatcgatatt
atcaaacacaatggcaggctgatcagccatgctgtcaaaaagttggttgaggattatgaa
tcaaacaaaaattcggtgatatttcaaatattagccatgctatttgaggcttgtggtgcc
aagcatgagatttatccagactaccttcatgagtcagatgtggatgacattgtattgtcc
cttgttgacctagctcgaaaaggtctggtggaagataattatagcacaaaacagaaggac
cttaaacacttcaaggagaacctggttatcttttgggatagcttagtccttgaatgtcag
aatggcccactgtttgatgataccttattccaaaagatcaaggattatgtgatcgcttta
tcatgtactcctccaagagtatatcgtcaagtagcttcattggtcggactccagcttgta
acatcattcatatctgttgctaagattcttagtggacaacgcgagactactcagaggcaa
ttgaatgcagagaagaagaagcagagtgatggaccacttgttgaatctctcaacaacaga
ttagctcttactcatgaaaacattacatacttggaggatttgatgcggaagatattcagt
gggttattcatgcaccgttatcgtgatgttgatcctgagatccggatgtcatgtatcaaa
tcccttggtatttgggttgtctcatatccatcactttttttgcaagatatatatctgaag
tatcttgggtggacactgaatgacaagaatgctggagttagaaggacttccattcttgcc
ttgcaaagtctgtatgaagtggatgacaacataccttcccttggtctcttcactgagagg
ttttacagcaggatgatccagcttgctgatgatattgatgtttcagtagctgtgtcagct
ataggactcatcaagcaattactgaggcatcagctgttgagcgatgatgatttgggcccg
ctatatgatttgcttattgatgagcctccaatgatcaggcgtgcgataggtgaactagtt
tatgatcacctaatagcgcaaaacatcaagacatctcagcctggagctagagatggggaa
aatgaaccctctgaggttcatattggccgaatgctgcaaatccttagagaattttcagaa
gacccggtccttagttcatacgtcattgatgatatttgggatgacatgaaggccatgaga
gactggaggtgtatgatctctgtgctcctcgatgaaaatccaggaattgagcttactgat
atggatggaacaaacctagttcgaatgctgcatgcctctgcaaagaaggctgttggggaa
agaataattccagcaatggataacagaaagttgtactataataaaggccaaaaggaaaca
ttggaaaatagcaagcgtgaaataacaagtgcctttttgacgaggtatccacatctttta
agaaaatacatgtctgacaaagctaagatatcacccctagttgatatgatggtccttttg
aaacttgagatgtattcattcaagagacaagagacgcatttcaaggcagccatagatctc
atcactgatgccttcttcaaacatggtgagaaggatgcactgagatcttgcatcaaggca
attactttctgttgcaccgagtgccaggctgatcttaaagactatgctgaaaataaactt
aagaatctcgaggatgagttggttttgaaagtcaaaactgcaatcaaggaagtagaggct
ggtgatgatgaatactctctcttggttaatttgaagcggctttatgaacttcagctgtca
aaacctgttaaaaatgatagtttatttgaggatatgtacagaatcctcagccatctaaga
gatatggacaatgaggtgaagagctttcttctcctcaatatgtaccttcaggtagcatgg
tgccttcatgtgatcgatggtgaaaacccatctgaaacatctattgatgaacttttatct
aagcaaagctcacttttcgatcaactctattattatttggtggtcctgcctacttatcaa
aaagaggggaggagcaccactgttctctcttgcagagtctgcatcattactgtagaaatg
tggtgcttgtttaaaaagtccaaatattcttcgacaagactagagagtttgggttatctc
ccacaagtagatatggttcagaagttctggaaactctgtgaacaacagctcaatatatca
gatgaaacagaagatgaagatgcaaatgaagaatatattgaagacacaaacagggatgct
gtcatgattgcagccgcaaagctagtgcttgctgatacaataccaaaggactaccttggt
ccagagattgtttctcactatgcatcccatggagcaagtacaaccgagataatcaagcat
ctaattacctctctaaagaaaaatgcagacttcgatatgggagctctgttttatgaggca
ttgagaaggttatatgaacggtacatgacccaagttaatgatggagaaaatcaaaccctg
attagcaagtcttattcggaatgtcaagatcttgctattcggctggcacggtcctacgtt
ggtgcagctcgcactaaaaacaagtctgagatcttgaagattatccaagatggtgtttct
tttgcctttgcagaccttccaaatcagttgtcattcctcgaggccgcacttctgccattt
gtttctaaacttgcatcggcagatataccagacatcctggcagatgtagagaagaggact
cgagatgcaaatatgaatgaagatcaaagtgtttggcgcccatattttacatttgtggag
cacctacgtgaaaaacatgcgaagaatgaggttttgcaggaggaggaggaaaagcctgtg
aagcgacggggccgaccgagaaaggttagagatgtaccaaacgtatcagatgtacgtggg
aagaaactctttaaagatgatgggaacaactctagcgacgaagattctatcagtgcctct
gaccatcacggccatggcgaagacgaagacagcgacgacgatgcaaatcagcccctgatc
aacacgatcaggtcttctgctgctaagctacggtcactgaaggtgtctcaacaaggaaca
agcagccgcaaaggagctgctgggccgtcaggaagcaatagctga
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