Panicum virgatum (switchgrass): 120645331
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Entry
120645331 CDS
T07260
Name
(RefSeq) probable pyridoxal 5'-phosphate synthase subunit PDX1.2
KO
K06215
pyridoxal 5'-phosphate synthase pdxS subunit [EC:
4.3.3.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00750
Vitamin B6 metabolism
pvir01100
Metabolic pathways
pvir01240
Biosynthesis of cofactors
Module
pvir_M00916
Pyridoxal phosphate biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00750 Vitamin B6 metabolism
120645331
Enzymes [BR:
pvir01000
]
4. Lyases
4.3 Carbon-nitrogen lyases
4.3.3 Amine-lyases
4.3.3.6 pyridoxal 5'-phosphate synthase (glutamine hydrolysing)
120645331
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Motif
Pfam:
SOR_SNZ
ThiG
Dus
TetR_C_27
Motif
Other DBs
NCBI-GeneID:
120645331
NCBI-ProteinID:
XP_039778067
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Position
8K:55673980..55675721
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AA seq
329 aa
AA seq
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MASDGTGVVALYGGGGGGNNNNNKVKVVDASSKSPAAAATFSVKVGLAQMLRGGVIMDVV
TPEQARLAEEAGACAVMALERVPADIRAQGGVARMSDPALIRDIKRAVTIPVMAKARIGH
FVEAQILEAVGVDYVDESEVLTPADDAHHINKHNFRVPFVCGCRDLGEALRRIREGAAMI
RTKGEAGTGNVVEAVRHVRSVMGAVRALRSMDDDEVFAYAKRIAAPYDLVMQTKQLGRLP
VVQFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPEILAD
VSAGLGEAMVGINLSDPKLGVERYAARSE
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgatggcaccggcgtcgtggccctctacggcggcggcggcggcggcaacaac
aacaacaacaaggtcaaggtcgtcgacgcctcctccaagtccccagccgccgccgccacc
ttctccgtcaaggtgggcctggcgcagatgctgcgcggcggcgtcatcatggacgtggtc
acgccggagcaggcgcgccttgccgaggaggccggggcctgcgccgtcatggcgctggag
cgcgtccccgccgacatccgcgcgcagggcggcgtggcccgcatgtccgacccggccctc
atccgcgacatcaagcgcgccgtcaccatcccggtcatggccaaggcgcgcatcggccac
ttcgtcgaggcccagatcctggaggccgtcggcgtcgactacgtggacgagagcgaggtg
ctcacccccgccgacgacgcgcaccacatcaacaagcacaacttccgcgtccccttcgtg
tgcggctgccgcgacctcggcgaggcgctgcgccgcatccgcgagggcgccgccatgatc
cgcaccaagggcgaggccggcaccggcaacgtcgtcgaggccgtgcgccacgtccgctcc
gtcatgggggccgtccgcgccctgcgcagcatggacgacgacgaggtcttcgcctacgcc
aagcgcatcgccgcgccctacgacctcgtcatgcagaccaagcagctgggccgcctcccc
gtcgtccagttcgccgccgggggagtcgccacccccgccgacgccgcgctcatgatgcag
ctcggctgcgacggcgtcttcgtcggctcggggatcttcaagagcggcgaccccgcgcgc
cgcgcccgtgccatcgtgcaggccgtcacacactacagcgacccggagatcctcgccgac
gtcagcgcagggctcggggaggcaatggtcgggatcaacctctccgacccaaaactcggg
gtggagcgctacgccgcgcgctccgagtag
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