Panicum virgatum (switchgrass): 120646041
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Entry
120646041 CDS
T07260
Name
(RefSeq) regulation of nuclear pre-mRNA domain-containing protein 2-like isoform X1
KO
K15559
regulator of Ty1 transposition protein 103
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120646041
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120646041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
CTK3
ALIX_LYPXL_bnd
Motif
Other DBs
NCBI-GeneID:
120646041
NCBI-ProteinID:
XP_039778679
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All DBs
Position
8K:complement(1786641..1797286)
Genome browser
AA seq
720 aa
AA seq
DB search
MIYVFSFITIPLLCQYISFLYTIYPRFSHKITGINIFAQKNKENENPRNTHARPKGKGER
KGWKATAAKPNPLGFPPPPRSPSPSPSPSHPRRHAQAQGLATEIGSILRRLHICLGFWGY
REGAELVGAFVMAGAKADADAETGDAGGGAAGFGVGGSFSEQRLVEKLNKLNSSAASIQT
LSQWCIFHRKRAKRVVDTWEKQFNSATKDKKVSFLYLSNDILQNSKRKGGDFVNEFWRVL
PRSLKHFYENGGEDGKKVVARLIGIWDERKVFGARIESLKDGILGDNPHILDNNGNSSNP
SSNPPSNSKVSRKDSGTTVKKLTVGGMPEKIVTAYQSVLDQHFDEDTALNKCKSTVGVLE
RINKDINDASTNGNQPASTLISDLQEQEMTLKQCIEQLESVDVARISLINQLKEALSEQE
SKSVVLRSQLQVARAEAELVIQLRQQLGGALATSATQSSPSPLMITPPEKTAGMVQGSGV
RSTPPQSQPPPPATSLPPTVSAVGDESKRSAAAMADKLASLSAPVLSSILSSLAAEQAAS
INGGPPSGEFSGGPPGFQIEKRPRLEKQAGDMGVLPFFGQAPQVQQQIGAVPTTLGGTQP
PTPVSFPPPPPPLPSLLPPLLQQFGQNTGGMIGMGGPFGMMASSMPPPPPLSNIMPAGFP
GPSGPPPPPPPPPAQSQPQQQQQSPQAPQQSPTSTGFFQSSGMSFFPPVQVQQSPSAQRQ
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgatatacgtattttctttcattaccatccctttgctttgtcaatatatcagttttctt
tacaccatctatcctaggttttcgcacaaaataaccggcatcaatattttcgcacaaaaa
aataaagaaaatgaaaaccccagaaacacacacgcacgcccaaagggcaagggggaaaga
aaagggtggaaagccaccgcagcaaaaccaaaccctctcggcttcccccctcctccccgc
tccccttccccttccccttccccttctcatccgcggcggcacgctcaagctcagggactc
gctaccgagattggttcgatcttgcgaagactacacatttgtctaggtttttggggttac
cgcgagggagctgaattagttggagccttcgtgatggcgggcgcgaaggcggatgcagac
gcggaaacgggggacgccggcggcggcgcagcgggcttcggggtaggcggctccttcagc
gagcagaggctggtcgagaagctcaacaagctcaacagctcagcggcgagtattcagaca
ctttcacaatggtgcatttttcaccgcaagagggccaaaagggttgtagacacatgggaa
aagcagtttaatagtgcaacgaaggataagaaagtatcattcctgtatctatcgaatgat
atcctgcaaaacagcaaacgcaagggaggagactttgtgaatgagttctggagggttcta
cctagatcactgaaacatttctatgaaaacgggggagaagatggaaagaaagtagtggca
agattaataggaatttgggatgaacgcaaggtttttggggcccgtatcgaaagtctgaaa
gatggcattcttggtgacaaccctcatatattggataacaacgggaatagttcaaatcct
agctctaatcccccttcaaattccaaagtttcacggaaggattctggtacaacagtaaaa
aaacttactgttggtgggatgcctgaaaagattgtgactgcataccaatcggtccttgat
caacattttgatgaagacacagctttaaacaaatgtaagagtactgttggtgttttggag
aggataaataaagatataaacgatgctagcaccaatggtaatcagccagcatcaacattg
atttctgaccttcaagaacaagaaatgaccctaaagcagtgcatcgaacaacttgaaagt
gtagatgtggccaggatatccctgatcaatcaattaaaagaagctctcagcgaacaggag
tcaaagtcagtggttcttcgcagtcagttgcaagttgctcgagcagaggctgaacttgtc
attcaacttagacaacaactgggtggtgcccttgccacaagcgccacacaatctagtcct
agtccgctcatgattactccaccagagaaaacagctggtatggtgcaaggttccggagta
aggtcgacacctccacagtcacagccaccgcctccagcaacctcacttccccctacggtc
agtgcagtgggtgacgagtccaagaggtcggcagcagctatggcagataagcttgcatct
ttgtcagcacctgtgctgagctccattctctcatctcttgccgctgagcaagctgcttcc
ataaatggcggaccaccgtctggagaattctctggaggaccaccaggcttccagattgaa
aagaggcctaggcttgagaagcaggccggtgatatgggtgttcttcccttttttgggcaa
gcaccacaggtgcaacaacagattggagcagtgcctactactcttggaggcacgcaacca
ccaacaccagtttcatttccaccacctccaccgccattgccatctctattgccaccgctt
ctacaacaatttggtcaaaatactggtggaatgatcggaatgggaggacctttcgggatg
atggcaagctctatgccacctccacctcctttgtccaacattatgccggcaggtttccca
ggaccaagtgggccacctcctccacctccacctccacccgctcagagccagccccagcag
cagcagcaatctcctcaggcaccacagcagtcaccgacatcaactggattctttcaatca
tcaggcatgagcttctttcctccagtgcaggtgcagcaatctccatctgcccaacgacag
tga
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