Panicum virgatum (switchgrass): 120646044
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Entry
120646044 CDS
T07260
Name
(RefSeq) non-structural maintenance of chromosomes element 1 homolog isoform X1
KO
K22817
non-structural maintenance of chromosomes element 1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120646044
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120646044
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120646044
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Atypical E3
120646044
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
120646044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_Nse1
zf-RING-like
SLX1_C
zf-HC5HC2H
zf-RING_2
DUF5968
Motif
Other DBs
NCBI-GeneID:
120646044
NCBI-ProteinID:
XP_039778682
LinkDB
All DBs
Position
8K:1799657..1802507
Genome browser
AA seq
338 aa
AA seq
DB search
MAPLPWRQRHHTLLQALLSRGPLAEPDFHAVFAAVSDRDPATHQQLFNDTLLKINKELAF
LQFELRACINQYDGMVYYGVANSIADEESKLGTKYSVPQIAFYKGLLEAIVQEAGNDGSI
TSIDALNVRLDNQVIIVGGSQDSQSLLPTSIKNFSLSQKEKTLDELIRDRWLSYTSTGKI
GLGTRSFLDLRSWFCGNDIPSCVVCNEACIKASSCPNEECNVRIHEYCLRKKFSQRKASR
ACPGCSTEWPRQDGEANCDDDVNEPGEDEAPSANHSSRKRRKQVKAELVEENNNAGPSTA
VPRSRTLRRAKAEAVEAAQEASSAGASQATRTSKRRKK
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccttgccttggcgccagcgccatcacaccctgctgcaggctctcctctcccgc
ggcccccttgccgagcccgacttccacgcagtcttcgctgctgtctctgacagggaccct
gcaactcatcaacaactgttcaatgatacacttctcaagatcaacaaggaactcgcattt
ctgcagtttgagttgcgagcatgcataaaccagtatgatggaatggtgtactacggagtg
gctaatagcattgctgacgaagaatcaaagcttgggacaaagtattctgtgccccagatt
gcattctacaagggactgttagaagcaattgttcaggaagctggaaatgatgggagcata
accagtattgacgctctcaatgtccggctggacaaccaggtcataattgtaggcggttca
caggacagccaatctcttcttcctacttccataaagaacttctcacttagccagaaagag
aaaaccctggatgagctgatacgggatcgttggttgtcatacacctccacaggcaagatt
ggtctgggcaccagatcatttcttgatctccgaagctggttctgtggtaatgacatccca
tcatgtgtggtctgtaacgaagcttgtataaaggcatcaagttgtcccaatgaggaatgc
aatgtaagaattcacgagtactgtctgaggaagaaattttcacagcgaaaggcttcaaga
gcttgtcccggttgcagtactgaatggccccgccaggatggtgaagccaattgcgatgat
gatgtgaatgagcctggtgaggatgaagccccttcagctaaccattcatcaaggaagagg
cgcaagcaagtcaaagccgagctggtggaagaaaataacaacgcaggcccatcaacagca
gtgcctaggagtaggacccttcgacgtgctaaagctgaagcggttgaggctgctcaagag
gcgtcttctgcaggagcttcgcaggcaaccaggacttcgaaaagaaggaagaagtga
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