Panicum virgatum (switchgrass): 120646053
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Entry
120646053 CDS
T07260
Name
(RefSeq) alpha-L-arabinofuranosidase 1-like
KO
K01209
alpha-L-arabinofuranosidase [EC:
3.2.1.55
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00520
Amino sugar and nucleotide sugar metabolism
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00520 Amino sugar and nucleotide sugar metabolism
120646053
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.55 non-reducing end alpha-L-arabinofuranosidase
120646053
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GFIT
Motif
Pfam:
ASD1_dom
Alpha-L-AF_C
CBM_4_9
Motif
Other DBs
NCBI-GeneID:
120646053
NCBI-ProteinID:
XP_039778694
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Position
8K:1899850..1905949
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AA seq
656 aa
AA seq
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MGTKEASPPTVLCLFFLFCLGGKCLASEFQATQTATLTVDASPQLARKIPDTLFGIFFEE
INHAGAGGIWAELVSNRGFEAGGPHTPSNIGPWSIIGDDSSIFVATDRTSCFNRNIVALR
MEVLCDNCPAGGVGIYNPGFWGMNIEDGKTYNLVMYAKSPETTDLTVSLTSADGSQSLAS
ATVTVSGTLNWTKLEQKLVAKGTNRTSRLQITTNKKGVVWFDQVSLMPEDTYKGHGFRTE
LISMLLDLKPRFLRFPGGCFVEGDWLRNAFRWRESIGPWEERPGHFGDVWHYWTDDGLGY
YEFLQLAEDLGAAPIWVFNNGVSHNDEVDTVAIAPFVKDVLDSLEFARGSANSTWGSVRA
SMGHPEPFPVKYVAIGNEDCGKKFYRGNYLKFYNAIRQAYPDIQMISNCDGSSKPLDHPA
DLYDFHVYTDSKTLFNMRSTFDRTSRSGPKAFVSEYAVWRSDAGRGSLLASLAEAAFLTG
LEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQHYGTPSYWMQTLFRESSGAMIHPI
KISSNYSGSLAASAITWQDSENSFLRVKVVNFGSDAVSLTISTSGLQASVNALGSTATVL
TSGNVMDENSFSNPNKVVPVKSELSNAAEQMQVTLAPHSFSSFDLALAQSKLIAEM
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgggtaccaaggaagcatcccctcctactgtcctctgcctcttctttctgttctgctta
ggcggcaaatgcctagcgtcagaattccaagctacccagacagcaaccctcacggttgat
gcctcaccgcagcttgctcggaagattcctgacacactatttgggatcttttttgaggag
atcaaccatgcaggagctggtggaatatgggctgaactcgttagtaacagaggttttgaa
gctggaggcccccatactccatcgaacattggcccatggtccatcattggagatgactct
tccatatttgtggcgactgatcgtacatcatgtttcaatcgaaacattgttgctctaagg
atggaggtcctctgtgataactgtccagctgggggtgttggcatttacaacccaggattc
tggggcatgaacatagaagatggaaagacatacaacctagttatgtatgctaagtcgcca
gaaacaacagacttgacagtttcgctaacgagtgctgatgggtcacaaagtctggcttca
gctacggtcacagtctctggcacattaaattggacaaaactggagcagaaattggttgcc
aaaggaaccaatagaacctcaaggcttcaaataacgactaacaagaaaggagttgtctgg
tttgatcaagtatcactcatgcctgaagacacatacaagggacacggttttcgcacagaa
cttatatccatgcttttggatttgaaaccacgattcttgagatttcctggaggctgcttt
gtagaaggtgattggttaaggaatgccttcaggtggagagaatctattggtccatgggag
gagagacctggacacttcggggatgtttggcactactggactgatgatggccttggatat
tatgaatttcttcagcttgcggaggacctgggtgctgccccaatctgggtgttcaacaac
ggagtcagccacaatgatgaagttgatactgttgctattgctccttttgtaaaggatgta
ttggacagtctagagtttgcaagggggagtgcaaactcaacatggggctctgttagggct
tcaatgggtcaccctgaacccttcccagtgaaatatgttgcaattggaaatgaagactgc
gggaaaaagttctaccgtggtaactacctcaagttctacaatgctataagacaggcctat
cctgacattcaaatgatctcaaactgtgatggttcgtctaaaccacttgatcatcctgct
gatttatacgacttccatgtctacactgactcgaagactttgtttaacatgaggagcaca
tttgacagaacatctcgtagtggacccaaggcttttgtgagtgagtacgctgtttggaga
agtgacgcaggtagaggaagtcttcttgcttcattggcagaagctgctttccttactggg
ctggagaagaatagtgacattgttcagatggcaagttatgctccactgttcgtgaacgac
aatgatcaaacgtggaacccagatgctattgtctttaactcgtggcagcattatggaact
ccgagttactggatgcaaacccttttccgtgagtccagtggtgccatgattcatccaatc
aaaatcagttccaactactctggttctctggcggcatctgcaattacttggcaagattca
gagaatagtttcctaagagtaaaggttgtaaactttggatcagatgctgttagccttaca
atctccacaagcggacttcaagctagtgttaatgctctgggatcaacagccactgttctc
acatccgggaatgtgatggatgaaaattctttcagtaacccaaacaaggttgtgccagtt
aagagcgagctgagcaatgccgcagagcagatgcaggtcacgctggctcctcactccttc
agttcattcgatctcgcgctggctcagtccaaacttattgcggaaatgtga
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