Panicum virgatum (switchgrass): 120646736
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Entry
120646736 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120646736 isoform X1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120646736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120646736
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120646736
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120646736
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120646736
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
120646736
Messenger RNA biogenesis [BR:
pvir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
120646736
Chaperones and folding catalysts [BR:
pvir03110
]
Heat shock proteins
HSP60 / Chaperonin
120646736
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
120646736
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120646736
Exosomal proteins of other body fluids (saliva and urine)
120646736
Exosomal proteins of breast cancer cells
120646736
Exosomal proteins of colorectal cancer cells
120646736
Exosomal proteins of bladder cancer cells
120646736
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Peptidase_C1
Zn_ribbon_SprT
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
120646736
NCBI-ProteinID:
XP_039779114
LinkDB
All DBs
Position
9K:61611957..61617900
Genome browser
AA seq
565 aa
AA seq
DB search
MVVQIIRGTRSEKYAAKDWSCEVCGNFNKINHFLIFDLPAFYCGRCKKMYDGIIYFNLAD
VEVNGKSILPEVKHQRGKPDCAFYAFAHAQEFNDIMENIILDDDSPIDAMDPMILADTYN
MMFGENEKIMEYSGLHKMLYTGLILKECSRRTVKDTERATHSDVVAVNLGKFEHICQCIA
DGRGVVGAFPVGKNLHLLKFGEVYSPPVSNAVGHAVMLIGAIFYQGSTIYIFLNSWGKEF
CALRDENGELIVGGIGMIEGLLLFNPIVLSRSWEKGVNGQLTGSWRQDLTEIEALLELEC
INMPAKLMPTFTNKQVNACAPYSGRYDFESTIDEVKLQNTRTLDMECNRCLLQPRVEICK
DGTSILDGAEDKKPIEGRTEQLGFAIEESTSNFDKEKLQERLEKLSGGVAVLKIDAASEV
EVGEQDRVTDAPNATKAAVEDGIVPSGIALLYTSKDLDKLETTNFDQKTGVQIMPSALKT
PVQTIASNADAEGAIIAGKLLGQENTCLGYDSAKGEYVDMVKAGIIDLLKLIRTALIDAA
SLSSQMTTPEATIVELPRKRAVLQQ
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggtagtccaaatcatacgaggaacgcgaagtgaaaaatacgcagctaaagattggtca
tgtgaagtttgcgggaatttcaacaaaatcaatcatttcttgatttttgatctcccagcc
ttctattgtggaagatgcaagaaaatgtacgatggtattatttactttaacttggctgac
gtcgaagttaatgggaagtctattttaccagaagtaaaacatcaaagaggaaagccggac
tgtgctttttatgcattcgcacatgctcaagagtttaatgacatcatggaaaacattatc
ttagatgatgattctccgattgatgctatggatcctatgatcctagctgatacctataat
atgatgtttggtgagaatgaaaagataatggagtattctggcctgcacaaaatgctttat
acaggtcttattctaaaagagtgtagtcggagaaccgtgaaggacacagaaagagcaaca
cattcggatgttgttgctgtgaacttgggcaaatttgagcacatttgtcagtgtatagct
gatggtcgtggtgttgtcggagcatttccagtaggaaaaaatttacatctacttaagttt
ggcgaagtttattcacctccagtgagtaatgctgtgggtcatgctgtgatgctcattggg
gcaatcttttatcagggcagcacaatatatatctttcttaattcatgggggaaggagttt
tgtgccctccgtgatgaaaatggggagctgattgtgggtggaataggaatgattgagggt
ctcttgttgttcaatcccattgtccttagcagatcatgggaaaaaggggtaaatggccag
ttaacagggtcatggagacaagacttaacagaaattgaggccttgcttgaacttgaatgt
attaatatgccagcaaagctgatgccaacatttaccaataaacaggttaatgcgtgtgcc
ccatacagtggaagatatgattttgaatcaaccattgatgaagttaagcttcaaaatacc
cgcacactcgacatggaatgcaaccgttgcttactccagccaagagttgaaatatgtaag
gatggcacttccatcctggatggagctgaagataagaagccaattgaagggagaactgag
cagctgggatttgctattgaggaaagcacttctaactttgataaggaaaagctacaagag
cgattggaaaaactttctggtggtgttgctgttctaaagattgatgccgcaagtgaagtg
gaagttggtgagcaggatagagtgactgatgcaccaaatgcaaccaaagctgcagttgag
gatggcattgtgccaagtggtattgcccttctctacacatcaaaagacctggataaattg
gagaccacaaactttgatcaaaagactggtgttcaaatcatgccaagtgctttgaagacc
ccggtgcagactattgcttcaaatgcagatgcagaaggagctattattgctggcaagctt
ttgggacaggaaaacacttgtctaggctacgattcagctaaaggtgaatatgtggatatg
gtgaaggctggtatcattgacctgcttaaattgatcaggacagccctgatagatgctgca
agtctgtcatctcagatgactaccccagaagcaacaattgttgagttgccaagaaagaga
gcggtgctccagcaatga
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