Panicum virgatum (switchgrass): 120646811
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Entry
120646811 CDS
T07260
Name
(RefSeq) nuclear pore complex protein NUP155-like isoform X1
KO
K14312
nuclear pore complex protein Nup155
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120646811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120646811
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120646811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_C
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
120646811
NCBI-ProteinID:
XP_039779225
LinkDB
All DBs
Position
9K:complement(62570351..62598157)
Genome browser
AA seq
1476 aa
AA seq
DB search
MAWGEDEAIGPDVASAGLHVTERIGRDAAAQPDLEEALEASRYASHPYSSHPKEWPPLVE
VAETRQLPPMLIERYNAAAGEGTALCGIFSDIHRAWATVDNSFFIWRFDKWDGQCQEHNV
DEQAICAVGLARAKPGIFIEAIQYLLVLATPVELVLVGVCCSASADGTDPYAELSLKPLP
EYMIATDGVTMTCITCTDKGQIFLAGRDGHIYELQYTTGSGWRKRCRKVCLTTGIGSLLS
RWVLPNAFKFSTVDPIINMVIDDERNTIYARTEGMKLQLFDLGANGDGPLTKVTEEKNIV
DPRDAPYGGRRPNARRSAQSPKPSIVCISPLSAMESKWLHAVAVLSDGKRLFLTTSGGSG
SSVGLNSSLQRPTCLKIVATRPSPPLGVGGGLTFGAVSAAGRAHPEDLALKVESAFYSAG
ALIMSDSSATAMSSLLAVQKDSAAQLSLPSTFGTASRSSRALRETVSALPVEGRMLCASD
VLPLPDAAFTMQSLYADVECFTGFRKPSEKASIKLWAKGDLPTQHILPRRRVVVFNTMGL
MEVIFNRPVDILRKLFDGNTLRSQIEEFFNRFGAGEAAAMCLMLAAKLLYAEDSLISNAV
SEKAAEAFEDPGLVGMPQIDGTTALSNTRTQAGGFSMGQVVQDAEPLFSGAYEGLCLCSS
RLLYPIWELPIMVIRGPGGTNEQEDGIVVCRLSAGAMKILESKIRSLETFLRSRRNKRRG
LYGYVAGLGDSGSILYKTGPIIGSGVNGRSPYNSQIRDINPTDQSASSKKPRLLYTSAEL
TAMEVRAMECLRRLLRRSGEALFLLQLICQHNVARLAQTLGNDLRKKLVQLTFHQLVCSE
DGDQLAMRLISALMEYYIGPEGRGTVEEISTKLREGCPSYFNESDYKYYLSVECLERASM
INNPEERDILAKDAFNLLTKIPDSADLSAICKRFENLRFYEAVVRLPLQKAQALDSNADV
INGQIDPKHHDMILLQREQCYEVVMNALRTLKGVGQSGMQGADKSSGLTTAVDPASRSKY
IKQIIQLSVQWPDTVFHEHLYRTLIELGLENELLEYGGSDLVSFLQSAGRKHQEEVRAVS
SLTTGASKLQDLGAPISTSQTKYLELLARYYVLKGEHIGAARMLLILAERQCSNSEEAPT
LEKRYEYLRDAVLQAKSASIAADSSRNPIDSSTVDLLEGKLAVLRFQMQIKQELELMVAR
VENTPPSSSESPSDPFPRDNILADAETAKAAKDKAKELSLNLKSITQLYNDYAVPFNLWE
VCLEMLSFANYSGDADSKIVREIWARLLDQALTRGGVAEACSVVKRVGSKLDPADGACLP
LDIICLHLEKAALDRLSSGEELVGDDDVARALLGACKGLPEPVLAVYDQLLSNGAIKPSL
NLKLRLLRSVLAILREWGMSVIAQRLGTTSAGASFFFDGTFSLSQTGTANQGARDKIISL
ANRYLNEVKRLNLAQNQTENVYRGFRELEEKLLSPY
NT seq
4431 nt
NT seq
+upstream
nt +downstream
nt
atggcgtggggggaggacgaggccatcggccccgacgtggcctcggcggggcttcacgtc
acggagcggatcggccgcgacgccgccgcacagcccgacctggaggaggccctcgaggcc
tcgcgctacgcgtcccacccctactcctcgcaccccaaggagtggcctcctttggtggaa
gttgctgaaactcgtcagctccctcctatgttgattgaaagatacaatgcagcagctggt
gaaggaacagccctttgtgggatcttttctgacatacaccgggcctgggcaacggttgac
aattcatttttcatctggcgttttgataaatgggatgggcagtgtcaagagcataatgtg
gatgagcaagcaatttgtgctgttggccttgctagggcaaagcctgggattttcattgaa
gccattcaataccttttagttttagcaactcctgttgagctggtacttgttggagtttgc
tgttctgctagtgctgatggaacagatccttatgctgagctttcattaaaacctttacct
gagtacatgattgccactgatggtgtcacaatgacatgcatcacatgtactgataaaggc
cagattttcctagctggacgtgatgggcatatatatgaattgcagtatacaactggttca
ggctggcgtaaacgctgtcgtaaagtttgtcttactactggcattggcagccttctttcc
aggtgggtcctgccaaatgcattcaaattctcaacagttgatcctattattaatatggtc
attgatgacgagaggaacactatctatgctcgcaccgaaggcatgaaattgcagttattt
gatttaggagctaatggtgatgggcctttgacaaaagtcactgaagaaaagaacattgtt
gatccacgagatgcaccttatggtggtcgaaggcctaatgcacgaagatctgcacaatca
ccaaaaccatcaattgtttgcatctcacctctatcggctatggaatcaaaatggcttcat
gctgttgctgttttatcagatgggaagagattgttccttactacatcaggtggaagtggc
tcttcagttggattgaacagtagtttacagaggccgacctgtttaaaaattgttgctact
aggccgtccccacccctgggggttggtggtgggcttacatttggtgctgtttctgcggct
ggcagagctcatcctgaggatctagctttaaaagttgagtctgcgttctattctgctggt
gctcttataatgtcagattcatcagctacagccatgtcatctcttctggctgtgcagaaa
gattcagctgcacagttatcccttccaagtaccttcggaacagcttctagaagctcccga
gctctaagagaaacagtctctgctttgcctgttgagggtcgaatgctttgtgcctctgat
gtccttccacttccagatgctgctttcacgatgcagtctttatacgctgatgtggaatgc
ttcacgggtttcagaaaaccttctgagaaggcatctataaaactgtgggctaaaggagat
cttcctacccagcatatcttacctcggaggagggttgttgtattcaatacaatgggtttg
atggaggtaatttttaacaggcctgttgatattctaagaaaattgtttgatgggaacacc
ttgagatcacaaatcgaagaattctttaaccgctttggtgctggagaggctgcagcaatg
tgcttaatgctagccgctaagctactttatgctgaagatagtctgataagcaatgctgtt
tctgagaaagctgctgaggcatttgaagaccctggacttgttgggatgcctcaaattgat
ggcaccactgctttatctaatacacggactcaggctggaggctttagtatgggtcaagtt
gttcaagatgcagaacctttgttttctggtgcatatgaagggctctgtttgtgctcttca
agactactataccccatttgggagcttcctattatggtgattcgaggacctgggggtact
aatgaacaggaggatggcatagttgtttgcaggctgtcagctggggccatgaaaattctt
gagagtaagattcgttcactggaaacatttttaagatctagaagaaacaagagaagaggc
ttgtatggttatgttgctggcctgggcgattctggctccatactctacaaaacagggcct
attattggttctggggtcaacgggaggagtccgtacaattcccagattcgagatataaac
cccacagatcaatctgcatcaagtaaaaagccgaggttgctttatacatcagcagaacta
actgctatggaggtgagggcaatggagtgtcttaggcgtttgcttaggagatctggcgaa
gcactctttttgcttcaacttatttgccagcataatgttgcccgcttggctcagacactg
ggcaatgatttacgcaagaaattagttcaactaacatttcatcaattagtatgttcagag
gatggcgatcagcttgcgatgcggcttatttctgcactcatggagtactatattggccca
gagggccgtggaactgttgaggaaatcagtactaaattgagggagggttgccctagctac
ttcaatgagtcagactacaaatattacttgtcagtggaatgccttgagagagcatctatg
attaataaccctgaggaaagagatattcttgctaaagatgctttcaacctcttaactaaa
attccagactctgctgacttgagtgccatatgcaagagatttgagaacctaagattttat
gaggctgtagtccggttgcctctgcagaaagctcaagcacttgactccaatgctgatgtt
atcaatggtcaaattgatccaaagcaccatgatatgatactgttgcagcgtgaacagtgc
tatgaggtagttatgaatgctctacgcaccctcaagggtgttgggcaaagtggaatgcaa
ggtgcagataagtcatctggtttaacaactgctgttgatccagcttctcgaagcaagtat
atcaaacagatcatccaacttagcgtccaatggccggacacggttttccatgagcatcta
tacaggacactgatcgagcttggtcttgaaaatgagcttttggagtatggtggttctgat
ttggtttcctttctgcagagtgctggtcgtaagcatcaagaagaggttcgggcggtttct
tcacttacaacaggagcttctaagttgcaagatttaggtgcacctatctcgactagtcaa
acaaagtatctcgagctcctagcaaggtactatgttcttaagggggagcatattggtgct
gccaggatgttgttaatattggcggagagacagtgctccaattctgaagaagccccaact
cttgaaaaaaggtatgaatatctcagagatgcagtgcttcaggccaaaagtgcaagcatc
gctgctgattcatctagaaatcctattgatagtagtacagtggatttgcttgaaggtaaa
cttgcagtgcttcgcttccaaatgcaaatcaaacaagaactggagctcatggtagcgcgg
gttgaaaatactccaccaagcagttccgaatcacctagtgacccattccctcgtgacaac
attcttgctgatgcagagactgctaaagctgctaaggataaggcaaaagagctttcattg
aatctcaagagtatcactcaactatataatgactatgctgttccatttaatctctgggag
gtttgcctggaaatgctgagctttgctaattactctggagatgctgatagcaaaattgtt
cgagaaatttgggctagactccttgaccaggcacttacaagaggtggtgttgcagaagca
tgttctgtggtgaaaagagtaggctcgaaactcgatcctgcagatggagcttgtttacct
ttggatataatatgccttcaccttgagaaggctgcattggatagattaagttcaggagaa
gaattggttggtgatgatgatgttgcaagagctcttcttggtgcctgtaaaggtcttcct
gaaccagttcttgctgtgtatgatcaactgttatcaaatggcgcaatcaaaccttcacta
aatcttaagttgcgccttttgagatcagttcttgcgatccttcgtgagtgggggatgtct
gtcattgcacagagactaggcaccacaagtgctggggcttcattcttttttgatggaaca
ttctcgctgagccaaacaggaactgcaaatcaaggtgctcgagataaaataattagcttg
gcgaacaggtatttgaatgaggtgaagcgattaaaccttgcacaaaaccaaacagagaat
gtctaccgtggtttccgtgaacttgaggaaaaattactctctccttattag
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