Panicum virgatum (switchgrass): 120646847
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Entry
120646847 CDS
T07260
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00040
Pentose and glucuronate interconversions
pvir01100
Metabolic pathways
Module
pvir_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
120646847
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
120646847
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GFIT
Motif
Pfam:
Glyco_hydro_28
Beta_helix
Pectate_lyase_4
NosD
Motif
Other DBs
NCBI-GeneID:
120646847
NCBI-ProteinID:
XP_039779271
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Position
9K:complement(62933998..62943967)
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AA seq
428 aa
AA seq
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MGLERLLLASIVAMWISPSILLPLASSEEIFLEAEGPAAESSDELWLRSGPPPRVVDVDD
YGARANGCDDTEAFLAAWREACNSSDYRSVYLVPEGKTYLLMPVSFCGPCRAISITAMIK
GTLEAPSNRSVWLDRNLQEWITFEGIDRLHVLGGGTLNGNGQQWWINSCKLNRSMRCVTG
PTAIYFRRCTHLVVEDLEVRDSMQMHVAIAYSWNVLVSKMFIAAPGWSPNTDGIHVSNSK
EVSISDCTISTGDDCISIVTGSMFVRVTGIFCGPGHGISIGSLGANNSWAHVSDVLVEKA
TLLGTTNGVRIKTWQGGYGYAERITFQDISMHNVTNPIIIDQNYCDSDKSCHEQGSAIAV
RNIHYRNIYGTSASKVAINFICSEVVCCDGIQMQDIYLVGEGRYATCSYKNATVVQLGYS
FPFCGAEM
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtctagagaggctgcttctagcctccatcgttgccatgtggatctctccttccatc
ctgctaccgcttgccagttcggaggaaatcttcctggaagctgagggcccggcggcagaa
agttcagacgagctgtggctcaggtccgggccgccgccgagggtcgtcgatgtcgacgac
tacggggcaagagccaacggctgcgacgacaccgaggcgtttcttgcggcgtggagggag
gcctgcaactcctccgattaccggtccgtgtacctcgtgcccgaggggaagacctacctc
ctgatgcccgtgagcttctgtggcccctgcagagctatctcaatcactgcaatgataaag
ggaacgctggaggctccgtccaaccgatcggtctggctggatcgcaacctgcaggaatgg
atcacgttcgagggcatcgatcgcctccatgtcctcggcggcgggacgctcaatgggaac
ggacagcaatggtggatcaactcgtgcaaactcaacagatccatgcgatgcgtcactggc
ccgacggcgatctacttcagaagatgcacgcacctagtcgtggaggatctggaggtgagg
gacagcatgcagatgcacgtcgcgatcgcctactcctggaacgtgctcgtgtcgaagatg
ttcatcgctgcgccgggatggagccccaacactgacggcatccatgtatccaacagcaag
gaagtgtccataagcgactgcaccatcagcacaggtgacgattgtatatccattgtgact
ggctcaatgtttgtacgggtgaccggcatattttgcgggccaggccatggaataagcatt
ggtagcctaggagcaaacaactcgtgggcccatgtctctgacgtgctggtggagaaggcc
acgctgctgggcacaaccaacggtgtgcggatcaaaacttggcagggtgggtatggctat
gccgaaaggataacttttcaagatatatcaatgcataatgttaccaatccgataattatt
gatcaaaattactgcgactccgataaatcttgtcatgaacagggatcggctattgctgta
cgcaatatacattacagaaacatatatggaaccagtgcttcaaaagttgccatcaatttt
atttgcagcgaagttgtctgttgcgatggaatacagatgcaagatatttacttggttgga
gaaggaagatacgctacatgttcctacaagaacgccacagttgtacaattagggtatagc
ttccccttttgcggcgcggaaatgtag
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