Panicum virgatum (switchgrass): 120646854
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Entry
120646854 CDS
T07260
Name
(RefSeq) probable methionine--tRNA ligase
KO
K01874
methionyl-tRNA synthetase [EC:
6.1.1.10
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00450
Selenocompound metabolism
pvir00970
Aminoacyl-tRNA biosynthesis
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
120646854
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120646854
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120646854
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120646854
Enzymes [BR:
pvir01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.10 methionine---tRNA ligase
120646854
Amino acid related enzymes [BR:
pvir01007
]
Aminoacyl-tRNA synthetase
Class I (U)
120646854
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
120646854
Prokaryotic type
Other AARSs
120646854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1g
tRNA_bind
Anticodon_3
tRNA-synt_1
Anticodon_1
tRNA-synt_1e
CoV_peptidase
Motif
Other DBs
NCBI-GeneID:
120646854
NCBI-ProteinID:
XP_039779285
LinkDB
All DBs
Position
9K:63021678..63028208
Genome browser
AA seq
801 aa
AA seq
DB search
MASSPPPPPKLPIPGRRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIY
ICGTDEYGTATETKAMEEKCTPKEICDKYHAIHSEVYKWFNIKFDKFGRTSSPEQTEICH
VIFHKLMENNWLTENTMQQLYCDTCQRFLADRLVEGTCPNKVCNAAARGDQCETCSTLLN
PTELIDPKCKVCKNTPRVRDTDHLFLELPLLKGKLVNYINETSVAGMWSQNAIQATNAWL
KEGLKPRCITRDLKWGVPVPHEKYKDKVFYVWFDAPIGYVSITASYTPDWEKWWKDPDNV
ELFQFMGKDNVPFHTIMFPSTLLGTGEKWTMMKTISVTEYLNYEAGKFSKSKGIGVFGND
AKDTNIPPEVWRYYLLMNRPEASDTLFTWADLQAKLNSELLNNLGNFINRVLSFVAKPAG
AGYDSIVPDAPNAESHPLTKAYAEKTSKWVEQYLDAMEKVKLKQGLKCAMAVSSDGNAYL
QESQFWKLYKEDSAACAIVMKTSLGLVYLLACLLEPFMPSFSEEVLRQLNLSPEENLSFS
EEKGEIAKAKSPWDFVPAGHKIGKPVPLFKELKDEEVALHREKYAGSQAERSSKAAADAE
ASKVANQLKGSKLSDGGPKKEQKKQSGGSKSKTAEADITVAKLDIRVGLIRKAEKHPDAD
SLYVEEIDVGEGTPRTVVSGLVKFIPLEEMQNRKVCVLCNLKPVAMRGIKSHAMVLAASN
EDHTKVELVEPPESAAVGERVTFAGFSGEPEASLSGKSKTWEKLAAELHSNGELVACYKD
VPFTTSAGVCKVKTIANGEIR
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctccccgccgccgccgccgaagttgccgatccccggccgccgcaacatactc
atcaccagcgcgcttccgtatgtcaataatgtcccccacctcgggaacatcatcggctgt
gtgctcagcgccgatgtgttcgcgcggtactgccggctccggggttacaacgccatctac
atatgcggtactgatgagtacgggacggccaccgagacgaaggccatggaggagaagtgc
acgcccaaggagatctgcgacaagtaccatgctattcatagtgaagtttacaagtggttt
aacataaaatttgacaagtttggacgcacatcctctcctgagcaaacagaaatctgccat
gtaattttccataaattaatggaaaacaattggctcacagaaaatactatgcagcagctt
tactgtgatacatgtcaaagatttttggctgatcggcttgttgaaggaacatgcccaaac
aaagtctgtaatgcagcagcacgtggagatcagtgtgaaacatgcagcaccttgttgaat
ccaaccgaactgattgacccgaagtgtaaagtttgtaagaatactccacgtgttcgtgac
acagatcacttattcttggagcttcctctgttaaaaggcaagttggtaaactacataaat
gaaacttcagtagctggtatgtggagtcaaaatgctattcaagcaacaaacgcatggctg
aaggaagggctaaagccgcgctgcatcaccagagatcttaaatggggtgttcctgtacct
cacgagaagtataaagacaaggtgttctatgtttggtttgatgcacctattggttatgtg
tctattacggcatcatatacacctgactgggagaagtggtggaaggatcctgataatgta
gaattgttccagtttatgggcaaagataatgtgccatttcacacgatcatgttcccttca
acactacttggaactggggaaaagtggacaatgatgaagacaataagtgttactgaatat
ctaaattatgaagcaggaaaattctccaagagtaaaggtataggagtctttggtaatgat
gcaaaggatacaaatattcctcctgaagtatggcgatactacctgcttatgaatcgccct
gaggcatcagatacactctttacttgggctgatttgcaagccaaattgaacagcgagttg
ctgaacaacttggggaacttcatcaatcgtgtgctaagttttgttgcaaaaccagctgga
gctggatatgattccattgtacctgatgctcctaatgcggaatcacatccattgacaaag
gcatatgcagaaaaaaccagtaaatgggttgagcaatatctcgatgcaatggaaaaggtt
aaactgaaacaaggactgaagtgtgcaatggccgtttctagtgatggaaatgcgtatctg
caagagagccagttttggaaactttacaaggaagattcagcagcatgtgcgattgtgatg
aaaacttcacttggtcttgtttacctccttgcctgtctgctggagcctttcatgccctcc
ttctctgaagaagtgttacgtcaattaaacttgtcccctgaagaaaacctgtcattcagt
gaagaaaaaggagaaatcgcaaaggcaaaatctccttgggattttgtaccagcagggcac
aaaattggaaagcctgttcctctattcaaggaattgaaagatgaagaagtagctctccat
agagaaaaatatgcgggtagccaagctgagagaagctcgaaagcagcagctgatgctgag
gccagcaaagttgctaaccagctcaagggctcgaaattatctgatggaggtccaaagaag
gaacaaaagaaacaatctggtggttcaaaatcaaagacagcagaggcagatattaccgtt
gcaaaattggatattcgagtggggcttatcagaaaagcagagaagcatccagatgctgat
tccctttacgtagaggagatcgatgttggggagggcacgccaagaacagtggtcagcggt
ctcgtgaaattcatacctcttgaagaaatgcagaatcggaaagtctgtgttctctgcaac
ctgaaaccggtggcaatgcgtggtataaaatcacacgccatggttttggctgcatcaaat
gaggaccacacgaaggttgagttggtggagccaccagaatctgctgccgtgggggagcgt
gtcaccttcgctgggttctcgggggagcccgaggcttccctcagcggcaagagcaagacg
tgggagaagctggccgccgagctgcacagcaacggcgagctggtggcgtgctacaaagac
gtgcccttcaccacctcggccggagtctgcaaggtcaagacaatagccaacggggagatt
cgctag
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