Panicum virgatum (switchgrass): 120646875
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Entry
120646875 CDS
T07260
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14-like isoform X1
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120646875
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
120646875
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
120646875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_30
AAA_19
DEXQc_Suv3
T2SSE
PhoH
Motif
Other DBs
NCBI-GeneID:
120646875
NCBI-ProteinID:
XP_039779318
LinkDB
All DBs
Position
9K:63180408..63209063
Genome browser
AA seq
2106 aa
AA seq
DB search
MLAPLPRLTSALRGHFDADQAYLLRKPVLQALTLPRPHDEWELARKIVPGWDDASSEVRQ
AYKQFIRAVAEMLNGEVVSEELHEVAQTAYAMFGGDDMEYDAAQRAFVKRSELERLVGYT
VQDSVLKKLAQLAQKLGSLQRASTHEFAHRIADDVDENERSEFGANFDFKPPARFVIDVS
LDIPLGSAELGSETFEKGQYDAWSTSATRNSTAIRGSVSLRWLKDQCDLITRSDGSFSGD
ELAMALCRVLLSNKAGDEIAGELLDLVGDTAFEIVQDLLLHRKELVDAIQHGLAILKSEK
MTSSNQPKMPTYGTQVTVQTESERQLDKIRRKEEKRGKRGADTGNGDIGVDDFSSLLLAS
ERKQPFDDVIGTGEGADSFTVTSLPQGTTRKHMKGYEEVKIPPTPTASLKPNEKLIEIRE
LDEFAQAAFQGYKSLNRVQSRIFQATYYTNENILVCAPTGAGKTNIAMIAVLHEVKQHFR
DGILHKNEFKIVYVAPMKALAAEVTATFSHRLSPLNLVVRELTGDMQLTKNEIEETQMIV
TTPEKWDVITRKSSDMSLSMLVKLIIIDEVHLLNDERGSVIEALVARTLRQVESMQSMIR
IVGLSATLPTYLEVAQFLRVNPETGLFFFDSSYRPVPLAQQYIGISERDYTKKTELFNTL
CYEKVVDSIKQGHQALVFVHTRKDTGKTARTLIDLAAKAGELELFSSADHPQFPLIKVYG
YLMVSLTINTVTVIYLVLWVQKDVGRAKSREVVEFFESGFGIHNAGMIRSDRSLMERLFG
DGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFD
KSGEGIIITTHDKLAYYLRLLTSQLPIESQFLGSLKDNLNAEVALGTVTNVREACAWLGY
TYLFIRMKTNPLVYGITWEEVLGDPSMGAKQRTFIIDAARALDKAKMMRYDEKSGNFYCT
ELGRIASHFYLQYSSVETYNEMLRRHMSESEVITMVAHSSEFENIVVREEEQDELEALAR
KACPLEIKGGPTDKHGKISILIQVYISRAPIDSSSLHSDAQYISQSLARIMRALFEICLC
RGWSEMSSLFLEYCKAVDRKIWPHLHPLRQFDKDLSPQILWKLEERNVDLDRLYEMEENE
IGALIRFSHQGKLVKQYVGYFPYVNLSAIVSPITRTVLKVDLHITPDFVWKDRYHGMSER
WWIIVEDSENDTIYHSELFTLTKKMARGTPTKISFNIPIFEPHPPQYYIRAISDSWLHAE
SLFTVSFHNLTLPQTQITHTELLDLKPLPLSALGNKTYEDLYRFSHFNPIQTQAFHVLYH
TDNNVLLGAPTGSGKTISAELAMLHLFNTQPDMKVVYIAPLKAIVRERMNDWRKRLVTQL
GKKMVEMTGDFTPDLMALLSADIIISTPEKWDGISRSWHSRSYVMKVGLMILDEIHLLGA
DRGPILEVIVSRMRYISSQTDRSIRFVGLSTALANARDLADWLGVTDDGLFNFKPSVRPV
PLEVHIQGYPGKFYCPRMNSMNKPAYAAICSHSPNNPVLIFVSSRRQTRLTALDIIQLAA
SDEKPRQFLSMEDNSLNMVLSQVSDSNLRHTLQFGIGLHHAGLNDRDRSLVEELFSNNRI
QVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYIDYDITDILQMMGRAGRPQYDQHGK
AVILVHEPKKSFYKKFLYEPFPVESNLREHLHDHINAEIVSGTISNKEEAIIYLTWTYLY
RRLVVNPAYYGLGDTETNTLNSYLSRLVETTFEDLEDSGCIRVDDHSLKYLILGKIASQY
YLSYLTVSMFGSNIGPNTSLEAFVHILSAAAEFDELPVRHNEDNLNRTLSDNVPYPVDQH
HLDDPHVKANLLFQAHFSRAELPISDYATDLKSVLDQSIRIIQAMIDVCANSGWLSSALS
CMHLLQMIIQGLWFERDSSLWMLPSMNDDILGHLLGRGVSTVSALLDFSREELHRLLRPF
SASELYQDLQHFPHVDVKLQLENEQERSKSPTLNIRVQLKNSRRSASRALAPRFPKAKQE
AWWLVLGNATNSELYGLKRISFADRVVNTRMELPQMFNIQETKLILVSDSYQGFDQEYSL
EHLTKR
NT seq
6321 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcgccgcttccgcgcttgactagcgcgctccgcgggcacttcgacgccgaccag
gcgtacctcctccgcaagcccgtcctccaggccctcaccctccccaggccgcatgacgag
tgggagctcgcccggaagatcgtgcccggctgggacgacgcttccagtgaagtgcgccag
gcatataaacaatttatcagggctgtggcggagatgttgaatggagaggtagtgtctgaa
gaactccatgaagttgctcagactgcatatgccatgtttggtggcgatgacatggagtat
gatgccgcccaaagagcctttgtcaaaaggagtgaattggaaaggcttgtgggctatact
gtacaagattcagttctaaagaagctagctcaattagctcagaagctcggttcccttcaa
agggcaagcacccatgaatttgcccacaggatagcagatgatgtagatgaaaatgagaga
agtgaatttggagcaaactttgatttcaagccacctgctcgtttcgttattgatgtttct
cttgacatacccttaggaagtgctgaattgggcagtgaaacatttgaaaaagggcagtat
gatgcttggagcacatccgcaactcgtaattcaactgctattaggggttctgtgagtttg
aggtggctgaaagatcaatgcgatttgataactagaagtgatggctcgttctcaggagat
gaacttgcaatggccttgtgcagagtgctcctatcaaataaagcaggcgatgagatagct
ggtgagctgttggacctggttggcgacactgcatttgaaatagttcaggatcttcttttg
catagaaaagagctagtagatgcaattcaacatggattggcgatattgaaatctgagaaa
atgacctcaagtaatcaaccaaagatgccaacttatggcacacaggtaactgtacaaaca
gagtctgagcgccaacttgataagattaggaggaaagaggaaaaacgtggcaaacgtggt
gcagacactggcaatggtgatattggtgtcgatgatttctcatcccttcttttggcaagt
gaaagaaagcagccatttgatgatgtgattggtactggagaaggggcagatagttttaca
gtaacttcccttcctcaaggaaccacaaggaaacacatgaagggctatgaagaagtgaag
attccaccaactccaacagcatcactgaaacccaatgagaagctgattgaaataagagaa
ttagatgagttcgcccaagcagcattccagggatacaagtcactcaatcgtgtgcagagt
cgcattttccaagctacatactacaccaatgagaatattctagtttgtgccccaacaggt
gctgggaaaacaaatattgcaatgattgcagttcttcatgaggttaaacagcactttagg
gatggcattttacataaaaatgagtttaagatagtctatgttgctccaatgaaggccttg
gctgcagaggtaacagcgacattcagtcaccgattatctccattgaacctggtcgttagg
gaacttacaggagatatgcagttgaccaaaaatgagattgaagaaacacagatgatagtg
actactcctgagaagtgggatgtcattacacgcaaaagtagtgacatgtcactttcaatg
ctggttaagctgataattattgatgaagtgcacctcctaaatgatgaaagaggttcagta
attgaggcactagtagctcggactctccgccaggttgagtctatgcaatcgatgattcgc
attgttggcctatctgctaccctgcctacctacttagaggttgcacaatttttgcgggtt
aatccggagactggccttttcttttttgattcaagttatcgtccagttcctcttgctcag
caatacattgggatcagtgaaagggattacactaagaaaactgaactattcaatactttg
tgctatgagaaggttgtggattccattaagcaaggtcaccaagcattggtttttgttcat
actcgtaaggatactgggaagactgctaggaccctgattgacctagctgcaaaagcaggg
gagctggaattattttcaagcgcagatcatccccagtttccattaatcaaggtatatggt
taccttatggtttcattgaccattaatacagtaactgttatttacttagtattatgggtg
cagaaagatgttggtagagcaaaaagtcgtgaagttgttgaatttttcgaatctgggttt
ggcatacacaatgctggaatgatacgttctgacagaagtttgatggagcgcttgtttggt
gatgggcttttgaaagtccttgtttgtacagcaactttggcttggggagtaaacttacca
gctcacacagttgttataaagggcacacagctatatgatcctaaagctggtgggtggcga
gatctggggatgcttgatgtgatgcagatcttcggacgtgctggaaggccacagttcgat
aaaagtggtgaaggaattattattacaacacatgacaaattggcttattacttacggtta
ttgacaagtcagcttccaatagagagccagttccttggatctctgaaagataatttaaat
gctgaggttgccttgggcactgtaacaaatgtcagggaggcctgtgcctggcttggctat
acatacttatttataaggatgaagactaatcctctggtttatggaataacttgggaagag
gttttgggagatccttctatgggcgcgaaacaaagaacattcattattgatgctgcacgt
gcactagacaaagctaagatgatgcgctacgatgaaaagagtggaaacttttactgcaca
gaacttggtcgaattgcaagccacttttaccttcagtactccagtgttgagacttacaat
gagatgcttcgacgtcacatgagtgaaagtgaggtgattactatggtggcccattcctct
gaatttgaaaatattgtagtgagagaagaagaacaggatgaattagaagcccttgctagg
aaagcgtgccccttggaaattaagggcgggccgactgacaaacatgggaaaatttcaatt
ctcatacaggtttatatttcccgtgctccaattgatagctcctctttacattctgatgct
caatacattagtcaaagtctggctcgcataatgagggcactatttgagatttgtctgtgt
cgggggtggtctgagatgtcatccttattcctagaatattgcaaggccgtggaccgcaaa
atatggcctcatctccatccacttaggcagtttgataaggatctttctcctcagatattg
tggaaacttgaggaaagaaatgttgatctggatcgcctttatgagatggaggaaaatgaa
attggagcactgatccggttttctcaccagggaaagctggttaagcaatatgttggatac
ttcccatatgtcaacttatctgcaattgtgagcccaatcactaggacggttcttaaagtt
gacctgcatataacgcctgattttgtgtggaaagatcgttatcatggcatgtcggaacga
tggtggattattgttgaggattctgaaaatgacaccatctatcactctgagctattcact
ctgacgaagaagatggcaagaggaacacccacaaagatatcttttaatataccaatattt
gaacctcacccaccacagtactatatacgagccatatcagactcatggttacatgctgag
tcactctttactgtttcttttcataatctgacattgccacagacacaaataacgcacact
gaacttttggacttgaagcctcttccgctgagtgctcttggcaacaaaacatacgaggat
ctctatagattttcacatttcaatccgatacaaactcaggcttttcatgttctctatcac
acggataataatgtacttttgggagctccaactggaagtggaaagacaatttcagcggaa
ctagcgatgcttcatcttttcaatactcaaccggacatgaaggtagtttacattgcccct
ctaaaggctattgtgcgagaaagaatgaatgattggagaaaacgtcttgtaacccagctt
gggaagaagatggttgagatgactggtgacttcactccagatttgatggccctattatca
gctgacatcataatttctacccctgaaaaatgggatgggattagtcgaagttggcatagc
agaagctatgttatgaaggtggggctcatgatattggatgagatacatcttttgggagct
gaccgtggacccatccttgaggtcattgtatcaagaatgcgatatatatcgtcacagaca
gatcgttcaattcggtttgtcggtttatcaacagcattagcaaatgctcgtgatttagct
gattggttgggcgttacggatgacggtctattcaatttcaagcctagtgtgaggcctgta
cctcttgaagtgcatatccagggatatcctgggaaattctactgtccgagaatgaatagc
atgaacaaaccagcttatgcagccatatgctctcattcacccaataatcctgttctcatt
tttgtgtcgtcacgtcgacagacaagacttacagcccttgatatcattcagcttgcagca
tcagacgaaaaaccaaggcagttcctgagcatggaggacaactccctaaacatggttctt
tcacaagtttctgatagtaatttgaggcatactctgcagtttggtataggtctgcatcat
gcaggtttaaatgacagagacagatccttggttgaggaactcttttcaaacaataggatt
caggtactggtatgtaccagcacgttagcgtggggtgtcaatcttccagctcatctggtc
ataatcaagggcactgaatactatgatggcaaaacaaaaagatacattgattatgatatc
acagatattctgcaaatgatgggtcgtgctggtcgaccgcaatacgaccaacatggcaaa
gctgttattctcgtccatgaaccaaaaaagagcttttacaagaagttcctctacgagcca
tttcctgtggagagtaatctgagggagcacttgcacgatcacataaatgcagaaattgtt
tctggcaccatcagcaacaaggaggaagcgattatttatctcacatggacttatctatat
cgcagattggttgttaatccagcctactatggattgggggatactgaaacaaataccttg
aattcttatctctcaaggttagttgaaactacatttgaagatcttgaggacagtggatgc
ataagagtggatgaccactctttaaagtacttgattttgggaaaaatagcatcacagtat
taccttagctacctcaccgtatcaatgtttgggtcaaatattggccccaatacatcattg
gaagcctttgtgcacatactgtcagctgctgcagaatttgatgagcttcctgtacgccac
aatgaggataacttgaatcgaacactcagtgataatgtcccgtatccagttgatcaacac
caccttgatgatccacatgttaaagccaacttactgtttcaggcacatttctcaagagct
gaattaccaattagcgattacgccacagacttgaaatcagttctcgatcagagcatacgt
attatacaggcaatgattgacgtatgtgccaatagtggatggctttcaagtgcattgtct
tgcatgcatctcttgcagatgatcatacagggtctctggtttgagagggactcgtcactc
tggatgttgccatccatgaatgatgatattctaggtcatctcctgggtagaggagtctca
acagtctcagccttgctggatttttctcgtgaagaattgcacaggctccttcgaccattt
tctgcatcagagttgtaccaggatctgcaacatttccctcatgttgatgtgaaacttcag
cttgagaatgaacaagagcggtccaaatctccaactttaaacatcagggtgcaattgaaa
aattcacggcgttcagcatcaagagcacttgcacctagatttcccaaggcaaaacaagaa
gcttggtggttggtcctagggaatgctacaaactcagagctgtatggtttaaaaagaatt
agttttgcagatcgggtggttaatactcgcatggaattgccacagatgttcaatatccag
gagacgaaactgattttggtgtcagattcctaccaaggttttgaccaggagtactctctt
gagcatctcaccaagcgttga
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integrated database retrieval system
