Panicum virgatum (switchgrass): 120646961
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Entry
120646961 CDS
T07260
Name
(RefSeq) peptidyl-prolyl cis-trans isomerase CYP65-like
KO
K10598
peptidyl-prolyl cis-trans isomerase-like 2 [EC:
5.2.1.8
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120646961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120646961
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120646961
04121 Ubiquitin system [BR:
pvir04121
]
120646961
Enzymes [BR:
pvir01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.8 peptidylprolyl isomerase
120646961
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120646961
Complex C
U4/U6.U5 tri-SnRNP related factors
120646961
Other splicing related proteins
Minor spliceosome components
Minor spliceosome associated proteins
120646961
Chaperones and folding catalysts [BR:
pvir03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
120646961
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
U-box type E3
120646961
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pro_isomerase
U-box
Rtf2
zf-NOSIP
RPA43_OB
Motif
Other DBs
NCBI-GeneID:
120646961
NCBI-ProteinID:
XP_039779456
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Position
9K:64096640..64100449
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AA seq
591 aa
AA seq
DB search
MGKKQHSKDRMFITRTEWATEWGGAKQKEVAAPFKRLPFYCCALTFLPFEDPVCTVDGSV
FDLMSIIPYLKKFGKHPVTGAPLKQEDLIPLTFHKNSDGEFQCPVLNKVFTEFTHIVAVK
TTGNVFCYEAIQELNIKPKNWKELLTDEPFTRNDLVTIQNPNVLDSKVLGEFDHVKKGLK
LEDEELQRMKDDPTYNINISGDLKQMIKELGTEKGKEAFLQGGGGQKAQKERAAALAAIL
ARKEKDDSKSGKELKPHQTFSIVDAASASVHGRSAAAAKAASAEKTAARIAMHMAGDRAP
VNAKLVKSRYTTGAASRSFTSTAYDPVTKNEYEYVKVERNPKKKGYVQLHTTHGDLNLEL
HCDITPRTCENFLTQCENSYYNGLIFHRSIKNFMIQGGDPTGTGSGGESIWGKPFKDELN
SKLLHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHTVFGMVVGGLTTLSAMEKVPV
DDDDRPLEEIKILRVSVFVNPYTEPDEEEEKAKEEEEKKKDEDYDKVGSWYSNPGTGVAG
STSTGGGVGKYLKARTAGSVDVTGNAGAPDDSSKKRKATASSVEFKDFSGW
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaagcagcacagcaaggaccgtatgttcatcacgcggacggagtgggcgacc
gaatggggcggcgccaagcagaaggaggtcgccgcgccgttcaagcgcctccccttctac
tgctgcgcactcacgtttcttccatttgaggatccagtgtgcactgttgatggaagcgtc
ttcgatttaatgagcataatcccataccttaaaaagtttggtaaacatccagtaaccgga
gcaccgctcaagcaggaagatctgattcctctcacgttccacaagaactcagatggagag
ttccagtgtcccgttctgaacaaagtttttaccgaattcactcacattgttgctgtaaaa
actactggaaatgtcttctgttatgaggcaatccaagaacttaacatcaaacctaagaat
tggaaagagttgctaactgatgagcccttcactcgaaatgacttggtaacaattcagaat
ccaaatgtgcttgatagcaaggtcttaggggaattcgaccatgtcaaaaagggcctcaaa
cttgaggatgaagagttgcagcgaatgaaagatgatccaacctacaacataaatatttct
ggtgatcttaagcaaatgattaaggaacttgggacggaaaagggaaaggaagcttttttg
cagggtggtggtgggcagaaagctcaaaaggaaagagctgccgctcttgctgctatttta
gcaagaaaggagaaggatgactcaaaatcaggaaaggaacttaaacctcatcaaactttc
agtatagtagatgctgcttctgcttctgttcatggcaggagtgcagcagcagcaaaagca
gcttctgctgaaaaaaccgctgctagaattgctatgcatatggcaggggatcgagctcct
gtgaatgccaaattggtcaaaagtcgttacacaactggagcagcttcacgctctttcaca
tcaactgcctatgatcctgttaccaaaaatgaatatgagtatgttaaagtcgaaagaaat
ccaaagaagaaaggatatgttcagctgcatacgacccatggtgatttaaatttggagctc
cattgtgatataactcctcggacatgtgaaaatttcctcacacaatgtgaaaacagttac
tataatggccttatcttccatcggagcatcaaaaacttcatgattcagggaggtgatcca
actggcacaggtagcggaggagagtccatatggggcaaaccattcaaggatgagctgaac
tcaaagctgctacattcaggaagaggtgtagtcagcatggcaaattcaggccctcatacc
aatggatcccaattttttatcttgtacaagtctgcaccacatttaaatttcaagcacaca
gtatttggcatggtggtgggtggtttaaccacactttcagctatggaaaaggttcctgtt
gatgacgacgaccggccattggaggaaataaagattctaagagtcagtgtgtttgtgaat
ccttacacggagccagatgaggaagaagaaaaggcaaaggaggaagaggagaagaaaaag
gatgaggattatgataaggtgggatcttggtatagcaacccaggaactggtgttgctggt
tcaacaagcactggcggtggagttggcaagtatctaaaagctcggactgctggctctgtt
gatgtgactggaaatgccggggcacctgatgattcaagcaagaagagaaaagcgactgca
tctagtgtagagttcaaagatttctccggatggtag
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