Panicum virgatum (switchgrass): 120646981
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Entry
120646981 CDS
T07260
Name
(RefSeq) serine--tRNA ligase-like
KO
K01875
seryl-tRNA synthetase [EC:
6.1.1.11
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120646981
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120646981
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120646981
Enzymes [BR:
pvir01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.11 serine---tRNA ligase
120646981
Amino acid related enzymes [BR:
pvir01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
120646981
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
120646981
Prokaryotic type
120646981
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA-synt_2b
Seryl_tRNA_N
FapA
CUX1_N
HIP1_clath_bdg
NET2A
PKcGMP_CC
T4SS_LegC2C7
OmpH
NPV_P10
YjcZ
Motif
Other DBs
NCBI-GeneID:
120646981
NCBI-ProteinID:
XP_039779489
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All DBs
Position
9K:complement(64229576..64234814)
Genome browser
AA seq
458 aa
AA seq
DB search
MLDINLFRTDKGGNPDIIRESQRSRFAPVELVDEVIALDKAWRERQFELDKIRQELNATS
KKIGKLKASKQEEEAKKLMESTDEIKKRLAAKEAEVQEAKSTLDAKLTTIGNIVHASVPI
SDDEANNAIVRTWGEKRLEENLKNHVDLCRMLDIVALEKGADVAGGRGYYLKDEGVLLNL
ALINFGLAFLRKRGFKPMQTPFFMRKETMGKCAQLAQFDEELYKVTGDGEDKYLIATSEQ
PLCAYHLGDRIYPAELPIKYAGYSTCFRKEAGSHGRDTAGIFRVHQFEKIEQFCVTSPNG
NDSWEVHEEMLKNSEDFYQEIGLPYQVVSIVSGALNDSAAKKYDLEAWFPASKTFRELVS
CSNCTDFQARRLGIGYGQKKNDEQSKQFVHMLNSTLTATERTLCCILENFQKEDGVEVPK
ALQPYMGGIDFLPFKQPLDVKQAADSKSNKSKSKGNAA
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacatcaacctcttccgcaccgacaagggcggcaacccggacatcatccgcgag
tcccagcgcagccggttcgcgcccgtcgagctcgtcgacgaggtcatcgccctcgacaag
gcatggcgcgaaaggcagttcgagctggacaagatacgccaggagctcaacgccaccagc
aagaagatcggcaagctcaaggctagcaagcaagaagaggaagcaaagaagctgatggag
agcacggacgagattaagaagaggctggctgccaaggaagctgaggtgcaggaggctaag
agcaccctcgacgccaagctcaccacgattggcaacatcgtgcatgcgtccgtgcccatc
agcgacgacgaggcaaataatgccattgtacggacatggggagagaagagactggaggaa
aatttgaagaatcacgtggatctttgcaggatgcttgacattgttgcattggagaagggt
gctgacgtggctggtggtaggggttactatttgaaggatgaaggtgtcctcctgaacctg
gcattgataaatttcgggctagctttcctgagaaaacggggctttaagccaatgcaaact
ccttttttcatgagaaaggaaactatgggaaaatgtgcccagctggcacagttcgatgag
gagctttacaaggtaacaggtgacggtgaggataaatacctcatagccacatctgaacag
ccattgtgtgcttatcatttaggtgaccgaatttaccctgctgagcttccaataaaatat
gctggttactctacctgcttccgaaaagaagctggttcgcatggaagggacacagctggc
atcttcagagtccaccaatttgaaaagattgaacagttctgtgttacaagcccaaatggc
aatgattcttgggaggtgcatgaagagatgttaaaaaattcagaagatttctatcaggag
attggcctaccatatcaggttgtctccattgtctctggtgcacttaatgattctgcagct
aaaaaatatgatttagaagcatggttccctgcatcgaaaacctttagagaattggtgtcc
tgttcaaattgcactgactttcaagcgaggaggcttggaattggttatggacagaaaaag
aatgacgagcagtccaagcagtttgttcatatgctcaattctacgttgactgccactgag
aggacactgtgttgtattctggaaaacttccagaaggaggatggtgttgaagtgccaaag
gcgctgcaaccgtacatgggtggaatagatttccttcctttcaagcaacctctggatgtc
aaacaagctgctgactcgaaatcaaacaagtccaaatctaagggaaatgctgcttga
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