Panicum virgatum (switchgrass): 120647081
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Entry
120647081 CDS
T07260
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog B-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120647081
09122 Translation
03013 Nucleocytoplasmic transport
120647081
03015 mRNA surveillance pathway
120647081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120647081
03041 Spliceosome [BR:
pvir03041
]
120647081
03009 Ribosome biogenesis [BR:
pvir03009
]
120647081
03012 Translation factors [BR:
pvir03012
]
120647081
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120647081
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120647081
mRNA cycle factors
Stress granule specific factors
120647081
Spliceosome [BR:
pvir03041
]
Complex C
Other components
EJC/TREX
120647081
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
90S particles
Helicases
120647081
Translation factors [BR:
pvir03012
]
Eukaryotic type
Initiation factors
eIF-4
120647081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
Utp25_C
Motif
Other DBs
NCBI-GeneID:
120647081
NCBI-ProteinID:
XP_039779641
LinkDB
All DBs
Position
1K:complement(56492985..56496154)
Genome browser
AA seq
407 aa
AA seq
DB search
MSAPTTSRRGPGAARSMDDDNLTFETSPGVEVVGAFDQMGIKDDLLRGIYGFGFEKPSAI
QQRAVLPIITGRDVIAQAQSGTGKTSMISLTVCQIVDTAVREVQALILSPTRELASQTER
VLLAIGDYLNIQVHACIGGKSIGEDIRRLDYGVHVVSGTPGRVCDMIKRRTLRTRAIKLL
VLDEADEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTSKFMTEPVRILVKRD
ELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRTNNFTV
SAMHGDMPQQERDAIMTEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR
IGRSGRFGRKGVAINFVRKDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgcccaccacctcccgccgcggccccggcgccgcccgcagcatggacgacgac
aacctcaccttcgagacctccccgggggtcgaggtcgtcggcgccttcgaccagatggga
atcaaggacgacctcctccgcggcatctacggcttcggcttcgagaagccctccgccatc
cagcagcgcgccgtcctccccatcatcaccggccgtgacgtcatcgcgcaggcccagtcc
ggcaccggaaagacatccatgatctccctcaccgtctgccagatcgtagacaccgccgta
cgcgaggtgcaggctttgatcctctcacctactagggagcttgcttcacagacggagaga
gttctgctggctattggtgactacctcaacatccaagtgcatgcttgcattggtggaaaa
agtatcggcgaggatatcaggaggctcgactacggagtgcatgttgtctcaggaactcca
ggcagagtctgtgatatgatcaagagaaggaccctgcgaacaagagccatcaagcttcta
gttctggatgaagctgatgagatgttgagcagaggctttaaggatcagatttatgatgtc
tacagatatctcccaccagaactccaggtggttttgatatctgccacccttcctcatgag
attctggagatgactagcaagttcatgaccgaaccagttaggatccttgtgaagcgtgat
gagttgaccctggagggcatcaaacaattctttgttgctgttgagaaagaggaatggaag
tttgatactttgtgtgatctttatgatacattgaccatcacccaagctgtcattttctgc
aatactaagagaaaggtggattggcttactgaaagaatgcggaccaataacttcacggta
tcagctatgcatggcgacatgccccagcaggaaagggatgccattatgactgagttcagg
tctggcgcaactcgtgtgctaatcactacggatgtttgggctcgaggactggatgttcag
caggtttctcttgtcataaattatgatctcccaaataaccgtgaactttacatccatcgc
attggtcgttctggtcgttttgggcgcaagggtgtggcgatcaatttcgtgcgcaaggat
gacatccgcatactgagagacatagaacagtattacagcacacagattgatgagatgcca
atgaatgttgctgatcttatttga
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