Panicum virgatum (switchgrass): 120647123
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Entry
120647123 CDS
T07260
Name
(RefSeq) protein argonaute 1C-like isoform X1
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120647123
03036 Chromosome and associated proteins [BR:
pvir03036
]
120647123
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120647123
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120647123
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
120647123
microRNA pathway
RISC loading complex
120647123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
120647123
NCBI-ProteinID:
XP_039779696
LinkDB
All DBs
Position
1K:complement(56562701..56574414)
Genome browser
AA seq
1043 aa
AA seq
DB search
MGSRRGRRQQQQQQQQQQEQEEEGSQPPHPRPAAAGRGGRAQQAPQGGGRGGNQGRPSPV
HEAHQQQPRGRPGEHPGRGHARGRGGTGTRPQQYPRAGAGAATGGQGLSTGPSSPLAPEL
RQAMQAPHELPQASPPQAGPSQSPPEIQPMEEHKLAAGHQAVPAIPSSSKSLRFPLRPGK
GSVGTRCLVKANHFFAQLPDRDLHHYDVSITPEVTSRLLSRAIIKELVNLHKQSYLGGRL
PAYDGRKSLYTAGPLPFTSQEFHITLLDDDDGSGSERRRRKFKVVIKFAARADLHRLELF
LAGRHAEAPQEALQVLDIVLRELPSARYAPFGRSFFSPDLGRRQPLGDGLESWRGFYQSI
RPTQMGLSLNIDMSATAFIEPLPVIEFVAQLLNSDIHSRPLSDAERVKIKKALRGVKVEV
THRGNMRRKYRISALTTQATRELTFPVDEGGTMKSVVQYFQETYGFSIQHTYLPCLQVGN
QQRPNYLPMEVCKIVEGQRYSKRLNQNQIRALLEETCQHPRDRERDIIRMVKHNAYDRDD
YAQEFGIKISDRLASVEARILPAPRLKYNETGQEKDCLPRVGQWNMMNKKMVNGGKVRSW
ICVNFARNVQESVVRGFCHELALMCQASGMDFAREPVLPPLYARPDQVERALKARYHDAM
NVLGPQRKELDLLIGILPDNNGSLYGDLKRVCEIDLGIVSQCCCTKQVFKMNKQILANLA
LKINVKVGGRNTVLVDAVSRRIPLVTDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWP
EVTKYAGLVSAQAHRQELIEDLYKVWQDPQRGTVSGGMIRELLISFKRSTGEKPQRIIFY
RDGVSEGQFYQVLLYELNAIRKACASLEANYQPKVTFVVVQKRHHTRLFAHNHNDRNSID
RSGNILPGTVVDSKICHPTEFDFYLCSHAGIKGTSRPAHYHVLWDENNFSADGLQTLTNN
LCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGPAGHGPQSASRSTRT
PGGAAVRPLPALKDNVKRVMFYC
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgaggaggggaaggcggcagcagcagcagcagcagcagcagcagcaggagcag
gaggaggagggctcacagcctccgcacccgcggcctgctgctgctggaagaggcggtcgt
gctcagcaggcaccgcaaggaggaggtcgtggggggaaccaggggcgcccatctcctgtt
cacgaggcccaccagcagcagcccaggggtcgccctggagagcatccgggcaggggacat
gctcgcggtcgcggtggaactggaacgcggccgcaacagtacccacgtgctggtgctggt
gctgctacgggtggccaggggttatccacaggaccatcaagccctttggctcccgagctg
cgccaagcaatgcaagctccacatgagcttcctcaagcctcaccaccgcaggcaggtcct
tcacaatcaccacccgagattcagcccatggaggagcacaaactcgctgcaggccaccag
gctgtgcctgcaattccctcctcaagcaagtcactcaggtttcctttgcgcccaggaaaa
ggtagtgttggcaccaggtgtttggttaaggccaatcatttctttgcccaacttccagac
agggatcttcatcactacgatgtctctatcacaccggaagttacatcacgacttcttagt
cgagccataatcaaggagctggtaaatctccacaagcaatcttacttgggtgggcggctt
ccagcctatgatggtaggaagagcctatacacagcgggcccattgccatttacttcccag
gaatttcatatcacgttacttgatgatgatgatggctctggttccgagaggcgacgtagg
aaatttaaggtagtcattaaatttgctgcacgagccgacctccaccgtctcgagttgttt
ttagctgggaggcatgcagaagctcctcaagaggcactgcaagttcttgatattgtgctg
cgggagctgccttctgcaagatatgcaccatttggccggtccttcttttcgcctgactta
ggccgaaggcagccccttggtgatggattagaaagctggaggggattttaccagagcatt
aggcctactcagatgggcctctcactgaacatcgatatgtcagcaacggctttcattgag
ccattacctgtaattgaatttgttgcacaactgctgaattctgacattcactctaggccc
ctctcagatgcggaacgtgtgaagatcaagaaggccttgagaggagttaaggtggaagtt
actcatcgtggcaacatgcggagaaagtatcggatatctgcattaacaactcaggcgact
cgagagttaacttttcctgttgatgaagggggcacaatgaagtcagttgtacaatacttt
caagagacatatggcttttccatccaacacacctaccttccttgccttcaagttggcaat
caacagcgtccaaattacttgcctatggaggtctgcaaaatagtggaaggacagaggtat
tccaagagattaaaccaaaatcagataagagctctcttggaggagacatgccagcaccca
cgtgatcgtgagcgcgatataattcggatggttaaacataatgcctatgatagggatgat
tacgcgcaagagtttggcattaagattagcgatcgtctggcatcagtagaggcacggatt
ttaccagctccacggcttaagtacaatgagactggtcaggagaaggattgcttacctaga
gttggtcagtggaatatgatgaacaagaaaatggtaaatggtggcaaagtcagaagctgg
atatgtgtcaattttgctcgcaatgtgcaagagagtgttgttcgtgggttctgtcatgaa
ctcgcactgatgtgccaagcgtcaggaatggactttgctcgggagcctgttcttccacct
ctatatgcacgtcctgatcaagtggagcgagctctaaaagctaggtaccatgatgccatg
aacgttcttggaccccaacgaaaggaacttgatttacttattggaatactacctgacaat
aacggttcactttatggtgatttgaagcgtgtgtgtgaaatagatcttgggatagtttcg
cagtgctgttgtacaaagcaggtgttcaaaatgaacaaacaaattcttgcaaatcttgct
ctgaagataaatgtcaaggttggaggcaggaataccgtactggtagatgcagtctcaagg
cggattcctctggtaactgacagacctacaattatatttggtgctgatgtgactcatcct
catcctggagaggacagcagcccttcaattgctgctgttgtggcctcccaagattggcca
gaagtgacaaagtatgctggattagtttctgctcaagctcatcggcaagaattgatagag
gatttatataaggtctggcaagacccgcagagagggacagttagcgggggaatgataagg
gagctacttatatccttcaaaagatcaacaggggagaagccccagcgaataatattttac
agggatggtgttagtgaaggacaattttatcaagttctgctatatgagctcaatgcaatc
cgaaaggcctgtgcctccctggaagcaaactaccaacctaaggtgacttttgttgtggtt
cagaagcgccatcataccagattatttgctcacaaccacaatgatcgaaattcaattgac
aggagtggaaacatactcccaggtacggttgtagattcgaagatctgccatcctactgaa
tttgacttctacttgtgcagccatgctggcattaagggcactagccgtccagctcattat
catgtcttgtgggatgagaacaacttctctgctgatgggttgcagactcttaccaacaac
ctctgttacacatatgcaaggtgcacacgctctgtatcaatcgttccaccggcatattat
gctcacctggctgccttccgtgctcgtttctacatggaaccagagacctcggacagtggt
tctatggcaagtggtcctgcaggccatggaccacaatcagcatcccgtagcactcggacc
cctggtggtgcagctgttaggccacttccggctctgaaggataatgtaaagagggtcatg
ttctactgctga
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