Panicum virgatum (switchgrass): 120647129
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Entry
120647129 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase SPL2-like
KO
K15688
E3 ubiquitin-protein ligase MUL1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120647129
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120647129
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120647129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GIDE
zf-C3HC4_3
Prok-RING_4
zf-RING_2
RING_XB3-XBAT31
zf-C3HC4
Importin_rep_6
DUF2062
TPR_21
Vpu
Motif
Other DBs
NCBI-GeneID:
120647129
NCBI-ProteinID:
XP_039779700
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All DBs
Position
9K:complement(65686204..65690652)
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AA seq
373 aa
AA seq
DB search
MSARDRETAEALVRLAASLDGAVLGLGTAAVAVASWVKYLTVSGQLRLVASAAASSIADL
RSLLPGSGGEPRLAAVRGYVRPKPGGMILQPPFSGEHGVITKHTQMCLFTEWRGIFGWTF
DLHALLFRSWKEQIVTSFRTVPFVLASSEIGNPIGMVHINVEKADPNQPLPLTTVFHKLI
PIETTPYALFQTIIGNGYPIALLDEEKILPIGKELTAIGLCRAKDESVEISSCPDLPFFL
SELTKDEMQAQLASRARTLFWGSIVLGTLSVCLVGHAIYRCWKRIKLRREARQAQQLFEE
AEDAIQEGDSSDEEVGDGQLCVVCLRRRRKAAFIPCGHLVCCCKCALRMEREAEPLCPMC
RQDIRYMMRIYDS
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcgcgtgaccgcgagacggccgaggcgctggtgcgcctcgccgcctcgctggac
ggggcggtgctcggcctgggcacggcggccgtcgccgtcgcgtcgtgggtcaagtacctc
accgtctcggggcagctgcgcctcgtcgcctccgcggcggcgtcctccatcgccgacctc
cgctccctcctccctggcagcggcggcgagccgcggctcgcggcggtgcggggctacgtg
cgccccaagccggggggcatgatcctccagcccccgttctccggggagcacggggtcatc
accaagcacacccagatgtgcttgttcacggaatggagaggtatctttggatggaccttt
gatctgcatgctcttcttttcagatcatggaaagagcagattgtaacatcttttagaacg
gttccgtttgttcttgccagttctgagattggaaaccctattgggatggttcatatcaat
gtagagaaggcggatcccaatcaaccattacctcttacaactgtgtttcataaacttatc
ccaattgagacaactccttacgcattgtttcaaactattattgggaatggctatcctatt
gcattattggatgaagaaaaaatactacctattggaaaggagcttacagcaataggacta
tgtcgagcaaaggatgaaagtgttgagattagctcgtgcccagatctcccctttttctta
tctgagctgaccaaggatgagatgcaagctcagctggcttcgcgtgctaggacactcttt
tggggtagtattgttttgggaaccttgtctgtttgcctagtgggccatgccatttacagg
tgctggaagagaatcaaactgcggagagaggctaggcaagcacaacagttatttgaggag
gctgaagatgctattcaagaaggtgactcgagtgacgaagaagtaggggacggtcagcta
tgtgttgtctgcctaaggaggagaaggaaagcagctttcattccttgtgggcatcttgtc
tgctgttgcaaatgtgcattaagaatggaacgtgaggctgaaccattgtgcccgatgtgt
cggcaggacatcagatacatgatgaggatttatgactcttga
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